View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_1 (Length: 856)
Name: NF5042_low_1
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 739; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 19 - 846
Target Start/End: Complemental strand, 5775124 - 5774304
Alignment:
| Q |
19 |
gtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaaatttcatttggaagtttttcatgtgttttcggaggatgaaatat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775124 |
gtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaaatttcatttggaagtttttcatgtgttttcggaggatgaaatat |
5775025 |
T |
|
| Q |
119 |
cgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggttaacatgtcgaaagaagagttcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775024 |
cgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggttaacatgtcgaaagaagagttcaa |
5774925 |
T |
|
| Q |
219 |
ggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtcttcttcccggaggat |
318 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774924 |
ggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtcttcttcccggaggat |
5774825 |
T |
|
| Q |
319 |
gagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtttgccagaccagccttactaaca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774824 |
gagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtttgccagaccagccttactaaca |
5774725 |
T |
|
| Q |
419 |
tggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatcgatcaatcaaattctgtggtgg |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
5774724 |
tggcatggaacagtatctctcagttcgactccaaatttcatttggaagtttttcaggtaattcatca----atcgatcaatcaatcaaattctgtggtgg |
5774629 |
T |
|
| Q |
519 |
ttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcag |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5774628 |
ttgtttatggttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcag |
5774529 |
T |
|
| Q |
619 |
ctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat-nnnnnnnnttgtggaaattttgtgttattt |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5774528 |
ctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtggaaattttgtgttattt |
5774429 |
T |
|
| Q |
718 |
agaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacgcacatgtgcttcatctctgatt |
817 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5774428 |
agaatgtaactaatcgaatgagtaaagt----tatataatagtatttcacctaggcatttgaaaaatttctgcacacacacatgtgcttcatctctgatt |
5774333 |
T |
|
| Q |
818 |
tttcacctttcttctttccatgatgatgt |
846 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
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| T |
5774332 |
tttaacctttcttctttccatgatgatgt |
5774304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 97 - 741
Target Start/End: Complemental strand, 5768766 - 5768137
Alignment:
| Q |
97 |
gtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggtta |
196 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5768766 |
gtgttttcggaggatgaaatatctaagctgtataggatccggaagacggtgatggagatgcttagagataggaattacctcgtaggagattttgaggtta |
5768667 |
T |
|
| Q |
197 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768666 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
5768567 |
T |
|
| Q |
297 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtt |
396 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
5768566 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttgcaccaaacgtatgaactccgagaatgtctacagagccatcatcgtt |
5768467 |
T |
|
| Q |
397 |
tgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatc |
496 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
5768466 |
tgccagaccagccttactaacatggca---------ctctctgaaatcgactccaaatttcatttggaagtttttcaggtaattcatca----atccatc |
5768380 |
T |
|
| Q |
497 |
gatcaatcaaattctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatca |
596 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
5768379 |
aatcaatcaaattttgtggtggttgttaatggttgaggtaaccgttgttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagatatca |
5768280 |
T |
|
| Q |
597 |
caagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnt |
696 |
Q |
| |
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| |||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| | |
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| T |
5768279 |
cgagcttgtgccagaacatcaggtgctgaccgacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttataaataaaat |
5768180 |
T |
|
| Q |
697 |
tgtggaaattttgtgttatttagaatgtaactaatcgaatgagta |
741 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
5768179 |
tgatgaaa--ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 97 - 416
Target Start/End: Complemental strand, 5775421 - 5775102
Alignment:
| Q |
97 |
gtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggtta |
196 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |||||| |
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| T |
5775421 |
gtgttttcggaggatgaaatatcaaagctgtataggatccggaagaaggtgatggagatgcttcgcgacaggaattacctcgtaggagatttcgaggttt |
5775322 |
T |
|
| Q |
197 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
296 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||| ||| || ||||||||||||||||||||||||| || || ||||| |||||||||||||||||||| |
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| T |
5775321 |
gtatgtcaaaacaagagttcaaggagacatatggtgagaacttgaagagagaagaccttgtcatcaagaaagccaaaaaagacaatccctctgaccagat |
5775222 |
T |
|
| Q |
297 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtt |
396 |
Q |
| |
|
|||||| ||||| || ||| |||| ||||||| |||||||||||| |||||||||||||| || ||| ||| || ||||||||||| |||||| ||||| |
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|
| T |
5775221 |
ttatgtgttctttcctgagaatgataaggttgacgtccacaccttaaggacttacaccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtt |
5775122 |
T |
|
| Q |
397 |
tgccagaccagccttactaa |
416 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5775121 |
tgccagaccagccttactaa |
5775102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 563 - 684
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
563 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacac |
662 |
Q |
| |
|
||||||| || |||||||||||| ||| | | || ||||||||| ||||||||| | || | ||||| |||||||||||| | |||||||||||||| |
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|
| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
|
| Q |
663 |
tgttaaagaaactcaggtcagt |
684 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 5768469 - 5768399
Alignment:
| Q |
19 |
gtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaaatttcatttggaagtttttca |
95 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5768469 |
gtttgccagaccagccttactaacatggcac------tctctgaaatcgactccaaatttcatttggaagtttttca |
5768399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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