View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_11 (Length: 405)
Name: NF5042_low_11
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 31702048 - 31702417
Alignment:
| Q |
16 |
ataaaatagaagaatgcatgataacacaagtatgtgtcaaatcaaacatccaacaaccctgataacacaagattctatgtgtcaaataatttaattttaa |
115 |
Q |
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| T |
31702048 |
ataaaatagaagaatgcatgataacacaagtatgtgtcaaatcaaacatccaacaaccctgataacacaagattgtatgtgtcaaataatttaa---taa |
31702144 |
T |
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| Q |
116 |
ttttggcacactatacaaagactatagtcgctgcttatctgtaatccaattcaatgataattatgatcatgcatgggacattccataccggctactagcc |
215 |
Q |
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| T |
31702145 |
ttttggcacactatacaaagcctatagtcgctgcttatctgtaatccaattcaatgataattatgat----catgggacattccataccggctactagcc |
31702240 |
T |
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| Q |
216 |
atatatatagacctaaattatgttaggttgcaacccnnnnnnnttcagttagcaagtatggaatcccnnnnnnnngaagaaaatgttacttccaatttgc |
315 |
Q |
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| T |
31702241 |
atatatatagacctaaataatgttaggttgcaacccaaaaaaattcagttagcaagtatggaatcccaaaaaaatgaagaaaatgttacttccaatttgc |
31702340 |
T |
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| Q |
316 |
tcaaagctcaaagccacatatggaatcacattttcaacttcataaattccatgtcacttaaatgtgtggttgattta |
392 |
Q |
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| T |
31702341 |
tcaaagctcaaagccacatatggaatcacattttcaacttcataaattccatgtcccttaaatgtgtggttgattta |
31702417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 297 - 382
Target Start/End: Original strand, 31683783 - 31683868
Alignment:
| Q |
297 |
aatgttacttccaatttgctcaaagctcaaagccacatatggaatcacattttcaacttcataaattccatgtcacttaaatgtgt |
382 |
Q |
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| T |
31683783 |
aatgttgcttcaaatttgctcaaagctcaaagccacatatggaaacacattttcaacttcataaattccatgtctcttaaatgtgt |
31683868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 388
Target Start/End: Original strand, 31734124 - 31734253
Alignment:
| Q |
259 |
ttcagttagcaagtatggaatcccnnnnnnnngaagaaaatgttacttccaatttgctcaaagctcaaagccacatatggaatcacattttcaacttcat |
358 |
Q |
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||||| |||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |
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| T |
31734124 |
ttcaggtagcaagtatggaatcccaaaataatgaagagaatgttgcttccaatttgctcaaggctcaaagtcacgtatggaatcacattttcaacttcat |
31734223 |
T |
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| Q |
359 |
aaattccatgtcacttaaatgtgtggttga |
388 |
Q |
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| T |
31734224 |
aaattcaatgtcgcttaaatgtgtagttga |
31734253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 31710763 - 31710847
Alignment:
| Q |
304 |
cttccaatttgctcaaagctcaaagccacatatggaatcacattttcaacttcataaattccatgtcacttaaatgtgtggttga |
388 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
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| T |
31710763 |
cttccaatttgctcaaagctcaaagccatgtatggaatcacatgtttaacttcataaattccatgtcacttaaatgtgtagttga |
31710847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 31713761 - 31713845
Alignment:
| Q |
304 |
cttccaatttgctcaaagctcaaagccacatatggaatcacattttcaacttcataaattccatgtcacttaaatgtgtggttga |
388 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
31713761 |
cttccactttgcttaaagctcaaagccacatatggaatcatatttgcaacttcataaattccatgtcacttaagtgtgtagttga |
31713845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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