View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_14 (Length: 383)
Name: NF5042_low_14
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 98 - 370
Target Start/End: Complemental strand, 36206800 - 36206524
Alignment:
| Q |
98 |
ttcaaactaaggttcaattgtaatgaattactatatata----gtgcaaatgcaatgggcaatgaaagatgcaaattcaagtctgatctaaaaattatta |
193 |
Q |
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| T |
36206800 |
ttcaaactaaggtccgatcgtcatgaattactatatatatatagtgcaaatgcaatgggcaatcaaagatgcaaatttgagtctgatctaaaaattatta |
36206701 |
T |
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| Q |
194 |
ggaaataagttatagcgaattaagaagagaatagagatggcagaactttatgtgaatcaggcaaaggaatattcaaatgcaaggccaagttatccggcac |
293 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
36206700 |
ggaaattagttatagcgaattaagaagagaatagagatggcagaactttatgtgaatcaggcaagggaatattcaaatgcaaggccaagttatccaccac |
36206601 |
T |
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| Q |
294 |
aactcttccaattcatagcttctaaaactccctctcacaacctcgcttgggatgttgccaccggaagtggacaagct |
370 |
Q |
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| T |
36206600 |
aactcttccaattcatagcttctaaaactccctctcacaacctcgtttgggacgttgccaccggaagtggacaagct |
36206524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 224 - 369
Target Start/End: Original strand, 35401696 - 35401841
Alignment:
| Q |
224 |
atagagatggcagaactttatgtgaatcaggcaaaggaatattcaaatgcaaggccaagttatccggcacaactcttccaattcatagcttctaaaactc |
323 |
Q |
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| T |
35401696 |
atagagatggcagagctttttgtgaatcagggaaaggaatacgcagatgcaaggccaagttatccaccacaactctttcaattcatagcttctaaaactc |
35401795 |
T |
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| Q |
324 |
cctctcacaacctcgcttgggatgttgccaccggaagtggacaagc |
369 |
Q |
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| T |
35401796 |
cctctcacaaccttgtttgggatgttgctactggaagtggccaagc |
35401841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 230 - 369
Target Start/End: Original strand, 35398974 - 35399113
Alignment:
| Q |
230 |
atggcagaactttatgtgaatcaggcaaaggaatattcaaatgcaaggccaagttatccggcacaactcttccaattcatagcttctaaaactccctctc |
329 |
Q |
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|||||||| |||| ||||||||||| ||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
35398974 |
atggcagagctttttgtgaatcagggaaaggaatacgcagatgcaaggccaagttatccaccacaactctttcaattcatagcttctaaaactccctctc |
35399073 |
T |
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| Q |
330 |
acaacctcgcttgggatgttgccaccggaagtggacaagc |
369 |
Q |
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| T |
35399074 |
acaaccttgtttgggatgttgctactggaagtggccaagc |
35399113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 359
Target Start/End: Complemental strand, 36210450 - 36210302
Alignment:
| Q |
211 |
aattaagaagagaatagagatggcagaactttatgtgaatcaggcaaaggaatattcaaatgcaaggccaagttatccggcacaactcttccaattcata |
310 |
Q |
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||||||| |||||||||| |||||||| | || || ||| |||| |||||||||| || || |||||||||||||||| |||||||||||||||||||| |
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| T |
36210450 |
aattaaggagagaatagaaatggcagagcattttgcgaaacagggaaaggaatatgcagattcaaggccaagttatccaccacaactcttccaattcata |
36210351 |
T |
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| Q |
311 |
gcttctaaaactccctctcacaacctcgcttgggatgttgccaccggaa |
359 |
Q |
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||||||||||||||||||||| |||| |||||||| || ||||| |||| |
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| T |
36210350 |
gcttctaaaactccctctcacgaccttgcttgggacgtggccacaggaa |
36210302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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