View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_15 (Length: 377)
Name: NF5042_low_15
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 44857670 - 44857311
Alignment:
| Q |
18 |
cacagagcacgcagattcaatttttgtatatggtgacacttacaaagttttcagtgagattattgcggatccaaatagctatggtaagaagtaaatgtcc |
117 |
Q |
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| T |
44857670 |
cacagagcacgcagattcaatttttgtatatggtgacacttacaaagttttcagtgagattattgcggatccaaatagctatggtaagaagtaaatgtcc |
44857571 |
T |
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| Q |
118 |
ttctatcttaataatagtataataagattatggtatactatgatttggtcatgatgtgtttgatataatatgatgattgtgattctactactacagggtt |
217 |
Q |
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| T |
44857570 |
ttctatcttaataatagtataataagattatggtatactatgatttggtcatgatgtgtttgatataatatgatgattgtgattctactactacagggtt |
44857471 |
T |
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| Q |
218 |
cagtgtaagtaatgtagcgtgctgtggttttggaaggaataaaggacagataaattgcttgccaatggcttatccatgctcaaatagagaccaatatgtg |
317 |
Q |
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| T |
44857470 |
cagtgtaagtaatgtagcgtgctgtggttttggaaggaataaaggacagataaattgcttgccaatggcttatccatgctcaaatagagaccaatatgtg |
44857371 |
T |
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| Q |
318 |
ttttgggatcccttccatccaacccaggctgtgaacaaaattatggctagtaaggctttt |
377 |
Q |
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| T |
44857370 |
ttttgggatcccttccatccaacccaggctgtgaacaaaattatggctagtaaggctttt |
44857311 |
T |
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