View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_16 (Length: 372)
Name: NF5042_low_16
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 26526228 - 26526590
Alignment:
| Q |
1 |
ctcattttgatctagctattctattcaaatgcataatagatcatggaattataacctgcataaaggccggaagcgttcgacnnnnnnnnnnnnnnnncga |
100 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||| |||||| ||| |
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| T |
26526228 |
ctcattttgatctagctattctattcaaaagctgaatagatcatggaattattacctgcataaatgccggaagctttcgacaaaaaactataaaaaacga |
26526327 |
T |
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| Q |
101 |
aatcaaggtaactaaattggacttgacgtagcgaaatcatggaattattatctgttaatgttcttatacagttttgtactgttacggtggtgtgttcaat |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26526328 |
aatcaaggtaacttaattggacttgacgtagcgaaatcatggaattattatctgttaatgttcttatacagttttgtactgttacggtggtgtgttcaat |
26526427 |
T |
|
| Q |
201 |
acaagacagacatgatctaatgttgttcttcctcatgaggctatcaaaaaatgatttgctagcattaaaaagtgattaaacataacaagggtcgaatgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
26526428 |
acaagacagacatgatctaatgttgttcttcctcatgaggctatcaaaaaatgatttgctagcattaagaagtgattaaacataacaaggttcgaatgtg |
26526527 |
T |
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| Q |
301 |
ttcctcactgtgtatgtaattagtattaatgtgcactaatttatattctattttctccttcat |
363 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26526528 |
ttcctcactgtgtacgtaattagtattaatgtgcactaatttatattctattttatccttcat |
26526590 |
T |
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