View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_17 (Length: 362)
Name: NF5042_low_17
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 30286054 - 30286385
Alignment:
| Q |
10 |
aagaatattctagaggctgccttcaatgtaagtatacaacagataagatacaatttatttagtatataccaaatggttttatttaatgtgtgtaaatatt |
109 |
Q |
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| T |
30286054 |
aagaatattctagaggctgccttcaatgtaagtatacaacagat-----acaatttatttagtatatactatatggttttatttaatgtgtgtaaatatt |
30286148 |
T |
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| Q |
110 |
tactttgtccttgttacaaaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttag |
209 |
Q |
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| T |
30286149 |
tactttgtccttgttacaaaatacagtccaattacgaggagatagagagggtgcttatagaagagaatgaacaagagccacaacacaggagaggccttag |
30286248 |
T |
|
| Q |
210 |
gaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctcc |
309 |
Q |
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| T |
30286249 |
gaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctcc |
30286348 |
T |
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| Q |
310 |
agaaggagtgaatcttctgaatctgaaccaatcaact |
346 |
Q |
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| T |
30286349 |
agaaggagtgaatcttctgaatctgaaccaatcaact |
30286385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 128 - 346
Target Start/End: Original strand, 30298632 - 30298847
Alignment:
| Q |
128 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
227 |
Q |
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| T |
30298632 |
aaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaagat---aggaggca |
30298728 |
T |
|
| Q |
228 |
gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatcttct |
327 |
Q |
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| T |
30298729 |
gcagagccaggattcaaatgtaatagtcaaagtatcaagagaacagattgaggaattgagcagacatgcaaaatctagctccagaaggagtggatcctcc |
30298828 |
T |
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| Q |
328 |
gaatctgaaccaatcaact |
346 |
Q |
| |
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||||||| |||| |||||| |
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| T |
30298829 |
gaatctgcaccattcaact |
30298847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 334
Target Start/End: Original strand, 30291181 - 30291384
Alignment:
| Q |
128 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggc- |
226 |
Q |
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| T |
30291181 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcaggagcaagagccacgacacaggagaggccttagg------gataggagaca |
30291274 |
T |
|
| Q |
227 |
--agcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatct |
324 |
Q |
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| T |
30291275 |
taagcagagccaggaagcaaatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctctagaaggagtgcatcc |
30291374 |
T |
|
| Q |
325 |
tctgaatctg |
334 |
Q |
| |
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|| ||||||| |
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| T |
30291375 |
tccgaatctg |
30291384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 128 - 317
Target Start/End: Original strand, 30303838 - 30304021
Alignment:
| Q |
128 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
227 |
Q |
| |
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||||| || ||||||| |||||||||||||||||||||||||||||||| || ||||| || || |||||||||||||||| || ||||| || |
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| T |
30303838 |
aaatataggccaattatgaggagatagagagggtgcttatagaagagcaggagcaagatccgca---caggagaggccttagg------gataggagaca |
30303928 |
T |
|
| Q |
228 |
---gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggag |
317 |
Q |
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| T |
30303929 |
taagcagagccaggaagcaaatgtaatagtaaaagtatcaagggaacagattgaggaattgagcagacatgccaaatctagctctagtaggag |
30304021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 128 - 334
Target Start/End: Original strand, 30314727 - 30314924
Alignment:
| Q |
128 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
227 |
Q |
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| T |
30314727 |
aaatataggccaattatgaggagatagagcgggtccttattgaagagca------agagccacaacacaggagaggccttagg------gataggagaca |
30314814 |
T |
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| Q |
228 |
---gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccagaaggagtgaatct |
324 |
Q |
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|||||||||||||||| |||||||||| ||||| ||||| ||||||||||| ||| |||||| | ||||||| |||||||| |||||||||| ||| |
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| T |
30314815 |
taagcagagccaggaagcagatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctctagaaggagtgcatcc |
30314914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 46809603 - 46809682
Alignment:
| Q |
229 |
cagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
308 |
Q |
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|||||||| ||||| |||| |||||| ||||| ||||||||||||||||| |||||||| | | ||||||| || ||||| |
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| T |
46809603 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctc |
46809682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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