View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_26 (Length: 257)
Name: NF5042_low_26
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 43446844 - 43446614
Alignment:
| Q |
1 |
atgaaatgcacacgtggagtttcatggttagaagatgatgaggtcaagagtttgaaagtactattgagtaggacatagaagtgagttgtgaggtgggtga |
100 |
Q |
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| T |
43446844 |
atgaaatgcacacgtggagtttcatggttagaagatga---ggtcaagagtttgaaagtactattgagtaggacatagaagtgagttgtgaggtgggtga |
43446748 |
T |
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| Q |
101 |
ggatagaaagtaaagcttaagaatcagagtgtatgaaaccatggaagcggtgtagaatcagaaatgaattgagttcaatttgtttgtcgttggtacagat |
200 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
43446747 |
ggatagaaaataaagcttaagaatcagagtgtctgaaaccatggaagcggtgtagaatcagaaatgaatcgagttcaatttgtttgtcgttggtacatat |
43446648 |
T |
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| Q |
201 |
tcactttttcactatagctaagagaagtgaagat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43446647 |
tcactttttcactatagctaagagaagtgaagat |
43446614 |
T |
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