View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_29 (Length: 251)
Name: NF5042_low_29
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_29 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 12096427 - 12096186
Alignment:
| Q |
10 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
12096427 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatctac |
12096328 |
T |
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| Q |
110 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
209 |
Q |
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|||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
12096327 |
cttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12096228 |
T |
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| Q |
210 |
ttggaacagcctaactggtcctatccctgattactttagcaa |
251 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12096227 |
ttggaacaacctaactggtcctatccctgattactttagcaa |
12096186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 12079787 - 12079546
Alignment:
| Q |
10 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
12079787 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatctac |
12079688 |
T |
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| Q |
110 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
209 |
Q |
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| T |
12079687 |
cttacctcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12079588 |
T |
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| Q |
210 |
ttggaacagcctaactggtcctatccctgattactttagcaa |
251 |
Q |
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| T |
12079587 |
ttggaacaacctaactggtcctatccctgattactttagcaa |
12079546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 1248839 - 1249080
Alignment:
| Q |
10 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
109 |
Q |
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|||||||||||||||||||| ||| | |||||||||||||| ||||| || || |||||||| || |||||||| ||||| || ||||| ||||| |||| |
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| T |
1248839 |
aagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgacctac |
1248938 |
T |
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| Q |
110 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
209 |
Q |
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| T |
1248939 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
1249038 |
T |
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| Q |
210 |
ttggaacagcctaactggtcctatccctgattactttagcaa |
251 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
1249039 |
ctggaacagcctaaccggtcctatccctgattactttagcaa |
1249080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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