View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042_low_3 (Length: 690)
Name: NF5042_low_3
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 22 - 680
Target Start/End: Original strand, 42924190 - 42924846
Alignment:
| Q |
22 |
tggttgcaacgggtacacacgactgattgcgca-tgtttctatacgataatagatatagagtaggagtggcatcatgacaggccactcaaacaaggaatt |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
42924190 |
tggttgcaacgggtacacacggctgattgggcaatgtttctataagataatagatatagagtaggagtggcatcatgacaggccaaccaaacaaggaatt |
42924289 |
T |
|
| Q |
121 |
tatattttttcgggaggtacaaattccaaatccaggtccaagattcaagagggttggcagtggtgttggcggcagggtgggagaagagccagtcgtagcc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
42924290 |
tatattttttcgggaggtacaaattccaaatccaagtccaagattcaagagggttggcagtggtgttggcggcagggtgggagaagagccaatcgtagcc |
42924389 |
T |
|
| Q |
221 |
gcttttagcagtataaactccatttttgttgtgagaccaaacaaaagtgtcgtctatggcatcattgaaagtgacatcgataccgttgatgttgtttgca |
320 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
42924390 |
acttttagcagaataaactcaatttttgttgtgagaccaaacaaaagtgtcgtctatagcatcattgaaagtgacatcggtacctttgatgttgtttgca |
42924489 |
T |
|
| Q |
321 |
atctcggtaggaagagaggtgtaaagaatgttagtggttgtctaacaaaggttagttcaagtaataagaatttaacttatatcgacaaagacatagttgc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42924490 |
atctcggtaggaagagaggtgtaaagaatgttagtggttgtctaacaaaggttagttcaagtaataagaatttaacttatatcgacaaagacatagttgc |
42924589 |
T |
|
| Q |
421 |
aaggatttagaaaacactctatggtct-cagcattactggttacatagcacagcgtgaagttatcgacaccatatcttattactaaaggtaaatttaaac |
519 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
42924590 |
aaggatttagaaaacactctatggtctatagcattactggttacataacacagcgtgaagttatcaacaccatatcttattactaaaggtaaatttaaac |
42924689 |
T |
|
| Q |
520 |
aattatttcccccggaagtatgaataatcaaacatgatttatagcagcactctaacactactgatgcaattgcaattgccagaaccacgctgtttctcat |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42924690 |
aattatttcccccggaagtatgaataatcaaacatgatttatagcagca----aacactactgatgcaattgcgattgccagaaccacgctgtttctcat |
42924785 |
T |
|
| Q |
620 |
atttgtaaacatctggattctgcctcgtgacttgcacatttaccaccataccctatttcat |
680 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42924786 |
atttgtaaacatctggattctgcctcgtgacttgcacatttaccaccataccctatttcat |
42924846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 356
Target Start/End: Original strand, 1577866 - 1578204
Alignment:
| Q |
22 |
tggttgcaacgggtacacacgactgattgcgca-tgtttctatacgataatagatatagagtaggagtggcatcatgacaggccactcaaacaaggaatt |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1577866 |
tggttgcaacgggtacacacggctgattgggcaatgtttatatacgataatagagatagagtaggagtggcatcatgacaggccagccaaacaaggaatt |
1577965 |
T |
|
| Q |
121 |
tatattttttcgggaggtacaaattccaaatccaggtccaagattcaagagggttggcagtggtgttggcggcagggtgggagaagag---ccagtcgta |
217 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||||| || |
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|
| T |
1577966 |
tatatttttctgggaggtgcaaattccaaatccatgtccaagattcatgagggtttgcagtggtgttggcggcagggtgggagaggaggagccagtcata |
1578065 |
T |
|
| Q |
218 |
gccgcttttagcagtataaactccatttttgttgtgagaccaaacaaaagtgtcgtctatggcatcattgaaagtgacatcgataccgttgatgttgttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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|
| T |
1578066 |
gccgcttttagcagtataaactccatttttgttgtgataccaaacaaaagtgtcgtctatggcatcattgaaagtgacattggtactgttgatgttgttt |
1578165 |
T |
|
| Q |
318 |
gcaatctcggtaggaagagaggtgtaaagaatgttagtg |
356 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1578166 |
gaaatctcggtaggaagagaggtgtaaagaatgttagtg |
1578204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 54 - 352
Target Start/End: Original strand, 31728288 - 31728585
Alignment:
| Q |
54 |
atgtttctatacgataatagatatagagtaggagtggcatcatgacaggccactcaaacaaggaatttatattttttcgggaggtacaaattccaaatcc |
153 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31728288 |
atgtttctatgcgataatagagatagagtaggagtggcatcatgacaggccaaccaaacaaggaatttatattttttcgggaggtgcaaattccaaatcc |
31728387 |
T |
|
| Q |
154 |
aggtccaagattcaagagggttggcagtggtgttggcggcagggtgggagaagagccagtcgtagccgcttttagcagtataaactccatttttgttgtg |
253 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31728388 |
aggtccaagattgatgagggt-ggcagtggtgtcggcggctgggtgggagaggagccaatcgtagccgcttttagcagtataaactccttttttgttgtg |
31728486 |
T |
|
| Q |
254 |
agaccaaacaaaagtgtcgtctatggcatcattgaaagtgacatcgataccgttgatgttgtttgcaatctcggtaggaagagaggtgtaaagaatgtt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
31728487 |
agaccaaacaaaagtgtcgtctatggcatcattgaaagtgacatcggtactattgatgttgttagcaatctcagtaggaagagaggtgtaaagaatgtt |
31728585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 21751717 - 21751659
Alignment:
| Q |
231 |
gtataaactccatttttgttgtgagaccaaacaaaagtgtcgtctatggcatcattgaa |
289 |
Q |
| |
|
||||| |||||||| |||||||| ||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
21751717 |
gtatagactccattcttgttgtgcgaccaaataaaagcatcgtcaatggcatcattgaa |
21751659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 48849613 - 48849282
Alignment:
| Q |
22 |
tggttgcaacgggtacacacgactgattgcgca-tgtttctatacgataatagatatagagtaggagtggcatcatgacaggccactcaaacaaggaatt |
120 |
Q |
| |
|
||||||||||||||||||| || |||| ||| ||||||||| |||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48849613 |
tggttgcaacgggtacacatagcttattgggcaatgtttctatgcgataatagagataaagtatgagtggcatcatgacaggccagccaaacaaggaatt |
48849514 |
T |
|
| Q |
121 |
tatattttttcgggaggtacaaattccaaatccaggtccaagattcaagagggttggcagtggtgttggcggcagggtgggagaagagccagtcgtagcc |
220 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| |||||||||||| | |||||||||||| ||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
48849513 |
tatatttctccgggaggtgcaaattccaaatctaggtccaagattgatgagggttggcagaggtgtcggcggcagggtgggagaggagccaatcgtagcc |
48849414 |
T |
|
| Q |
221 |
gcttttagcagtataaactccatttttgttgtgagaccaaacaaaagtgtcgtctatggcatcattgaaagtgacatcgataccgttgatgttgtttgca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||| ||| |||||||||||| ||| |
|
|
| T |
48849413 |
gcttttagcagtataaactccatttttgttgtcagaccaaacaaaagtgtctgctatggcatcgttgaaagtggcatcggtactgttgatgttgttagca |
48849314 |
T |
|
| Q |
321 |
atctcggtaggaagagaggtgtaaagaatgtt |
352 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
48849313 |
atctcagtaggaagagaggtgtaaagaatgtt |
48849282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 43923723 - 43923392
Alignment:
| Q |
22 |
tggttgcaacgggtacacacgactgattgcgca-tgtttctatacgataatagatatagagtaggagtggcatcatgacaggccactcaaacaaggaatt |
120 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
43923723 |
tggttgcaacaggtacacatagctgattgggcaatgtttctatgcgataatagagatagagtaggagtggcatcatgacaagccagccaaacaagaaatt |
43923624 |
T |
|
| Q |
121 |
tatattttttcgggaggtacaaattccaaatccaggtccaagattcaagagggttggcagtggtgttggcggcagggtgggagaagagccagtcgtagcc |
220 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||||||||| | ||||||||||| |||||| ||| | |||||||||| |||||| |||||||| |
|
|
| T |
43923623 |
tatatttttccaggaggtgcaaattccaaatccaggtccaagattgatgagggttggcactggtgtcggcaactgggtgggagaggagccaatcgtagcc |
43923524 |
T |
|
| Q |
221 |
gcttttagcagtataaactccatttttgttgtgagaccaaacaaaagtgtcgtctatggcatcattgaaagtgacatcgataccgttgatgttgtttgca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||||||||||| || |||||||||||| ||| |
|
|
| T |
43923523 |
gcttttagcagtataaactccatttttgttgtgaaaccaaacaaaagtgtcatctatgacatcgttgaaagtgacatccgtattgttgatgttgttagca |
43923424 |
T |
|
| Q |
321 |
atctcggtaggaagagaggtgtaaagaatgtt |
352 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |
|
|
| T |
43923423 |
atctcagttggaagagaggtgtaaagaatgtt |
43923392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 55417150 - 55417399
Alignment:
| Q |
22 |
tggttgcaacgggtacacacgactgattgcgca-tgtttctatacgataatagatatagagtaggagtggcatcatgacaggccactcaaacaaggaatt |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| ||||| ||| | |||||||| ||||||||||||||||||||| | ||||| |||| |||||||| |
|
|
| T |
55417150 |
tggttgcaacgggtacacacgattgattgggcaatgtttatatgcaataatagagatagagtaggagtggcatcataataggccggccaaaaaaggaatt |
55417249 |
T |
|
| Q |
121 |
tatattttttcgggaggtacaaattccaaatccaggtccaagattcaagagggttggcagtggtgttggcggcagggtgggagaagagccagtcgtagcc |
220 |
Q |
| |
|
||||||||| ||| |||| ||| |||||||||| | |||||| | | ||||| || |||||| | | | |||| | |||| |||||| || ||||| |
|
|
| T |
55417250 |
tatatttttccggaaggtgcaatgtccaaatccaagaccaagactgatgagggacggtggtggtgctagtgacaggaagagagaggagccaatcatagcc |
55417349 |
T |
|
| Q |
221 |
gcttttagcagtataaactccatttttgttgtgagaccaaacaaaagtgt |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
55417350 |
gcttttagcagtataaactccatttttgttgcgagaccaagcaaaagtgt |
55417399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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