View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_31 (Length: 250)
Name: NF5042_low_31
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 17269266 - 17269497
Alignment:
| Q |
10 |
attattctcaagtagattcttctaacgcttaagcatcatgagtatccttcagtagtagtacaaatccaacaccacaataatcagagaatttattgttctg |
109 |
Q |
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| T |
17269266 |
attattctcaagtagattcttctaatgcttaagcatcatgagtatccttcactagtagtacaaatccacaaccacaataaacagagaatttattgttctg |
17269365 |
T |
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| Q |
110 |
tgtactgtatagtgcatgcttattaattgatacaactcatggacagagacattaatatttatagttatatagttatagttctaggtgcatatatttatta |
209 |
Q |
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| T |
17269366 |
tgtactgtatagtgcatgcttattaattgatacaactcat-gacaaggacatgaatatt--------tatagttctagttctaggtgcatatatttatta |
17269456 |
T |
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| Q |
210 |
actgatacaactcatggatatggaggacagtaatcaatatt |
250 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
17269457 |
actgatacaactcatgcatatggaggacagtaatcaatatt |
17269497 |
T |
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