View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_33 (Length: 247)
Name: NF5042_low_33
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 35977726 - 35977955
Alignment:
| Q |
1 |
atgtgataaccatagtagtgggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttc |
100 |
Q |
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| T |
35977726 |
atgtgataaccatagtagtgggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttc |
35977825 |
T |
|
| Q |
101 |
catatatgttgatggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35977826 |
catatatgttgatggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaa |
35977925 |
T |
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| Q |
201 |
gaagctcacaaccaagctgctatgaaagct |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35977926 |
gaagctcacaaccaagctgctatgaaagct |
35977955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 35967567 - 35967765
Alignment:
| Q |
29 |
agtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaat |
128 |
Q |
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| T |
35967567 |
agtgaaaatgaataagatgaggctgcaggagctttgtcaccaaagaaagtggagtttgcctaagtactctgccttgaatgtcgatggtccaccacacaaa |
35967666 |
T |
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| Q |
129 |
ccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaaccaagctgctatgaaag |
228 |
Q |
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| T |
35967667 |
ccaagctttaagggctctgtctttgtcaatggtttaaccttta---cttctgatgcttttcattcctccaaagaagctcacaaccaagctgctctgaaag |
35967763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 35955125 - 35955334
Alignment:
| Q |
21 |
ggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccac |
120 |
Q |
| |
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|||||| ||||||||||| ||||||| | ||||||||| | |||||||||||| ||||||||||||| | || ||| || | ||||||| ||||||| |
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| T |
35955125 |
ggagtgtaagtgaaaatgcacaagtcaaaactgcaggagctgtgtcaccggagacggtggagtttgcctaagtattctgcctttcatgttgacggtccac |
35955224 |
T |
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| Q |
121 |
cacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaaccaagctgc |
220 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||| | ||||||||||||||||||| || |||||||| ||||||||| ||||||||||| |
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| T |
35955225 |
cacacaatccaagctttaagggctctgtttttgtgaatggccttacctttacttcttctgataccttcaattcctccggagaagctcaaaaccaagctgc |
35955324 |
T |
|
| Q |
221 |
tatgaaagct |
230 |
Q |
| |
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|||||||||| |
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| T |
35955325 |
tatgaaagct |
35955334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 35950416 - 35950524
Alignment:
| Q |
122 |
acacaatccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgatatttttcattcctccaaagaagctcacaaccaagctgct |
221 |
Q |
| |
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|||||| ||||| ||||| | |||||| |||||||||| | |||||| ||||||||||| ||| ||||| ||||||||||||| |||||||||||| |
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| T |
35950416 |
acacaagccaagctttaatgcctctgttcatgtcaatggtgtcacctttgcttcttctgatgctttcaattccgccaaagaagctcaaaaccaagctgct |
35950515 |
T |
|
| Q |
222 |
atgaaagct |
230 |
Q |
| |
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||||||||| |
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|
| T |
35950516 |
atgaaagct |
35950524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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