View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_38 (Length: 238)
Name: NF5042_low_38
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 47456856 - 47457066
Alignment:
| Q |
18 |
tttttaatatgaatgtttatttcttatatagcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggattcaat |
117 |
Q |
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| T |
47456856 |
tttttaatatgaatgtttatttcttatatagcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggattcaat |
47456955 |
T |
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| Q |
118 |
ctcaacaggaagatttctccaccaccatgaacttaaaatgaaacctgtttatgagtgatattagatttaagaacttagctcatttacatattatcatgca |
217 |
Q |
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| T |
47456956 |
ctcaacaggaagatttctccaccaccatgaacttaaaatgaaacctgtttatgagtgatattagatttaagaacttagctcatttacatattatcatgca |
47457055 |
T |
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| Q |
218 |
ttaagaataat |
228 |
Q |
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| T |
47457056 |
ttaagtataat |
47457066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 5272095 - 5272013
Alignment:
| Q |
41 |
ttatatagcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggattcaatctcaac |
123 |
Q |
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| T |
5272095 |
ttatgtagcttttgagctctgatgatatgtggatgtatgcaccacttgcttacaatggacttgaccttggactcaatctcaac |
5272013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 48145680 - 48145614
Alignment:
| Q |
47 |
agcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggatt |
113 |
Q |
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| T |
48145680 |
agcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatggaatgaacattggatt |
48145614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 48140724 - 48140647
Alignment:
| Q |
47 |
agcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggattcaatctcaaca |
124 |
Q |
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| T |
48140724 |
agcttctgagctctgatgatcactggatgtatgctccaattgcttacaatggaatgaacattggactaaacctcaaca |
48140647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 48150519 - 48150474
Alignment:
| Q |
68 |
tgtggatgtatgctccaattgcttataatggacttgacattggatt |
113 |
Q |
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| T |
48150519 |
tgtggatgtatgctccaattgcttacaatggaatgaacattggatt |
48150474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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