View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5042_low_40 (Length: 238)
Name: NF5042_low_40
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 2700918 - 2701133
Alignment:
| Q |
20 |
tgttaccagaaatttggcttccttcatgttctgctattaagggaatattcagagcaacatcttcattacactgctgccacttatcaccttctccttccat |
119 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
2700918 |
tgttgccagaaatttggcttccttcatgctctgctattaagggaatattcagagcaacatcttcactacactgctgccacttatcaccttcaccttccat |
2701017 |
T |
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| Q |
120 |
tgatagtttcaagaaagatagaggcagagttttgttgtttgctacttcttagtttaccaagactatggacaatgcttatctcttattcagaaataataat |
219 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2701018 |
tgatagtttcaagaaagatagaggtagagttttgttgtttgctacttcttagtttaccaagactatggacaatgtttatctcttattcagaaataataat |
2701117 |
T |
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| Q |
220 |
aataatctttagtgca |
235 |
Q |
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|||||||||||||||| |
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| T |
2701118 |
aataatctttagtgca |
2701133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 10843482 - 10843596
Alignment:
| Q |
23 |
taccagaaatttggcttccttcatgttctgctattaagggaatattcagagcaacatcttcattacactgctgccacttatcaccttctccttccattga |
122 |
Q |
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|||||||||||||| ||||||||||||||| || | |||| |||||||| | |||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
10843482 |
taccagaaatttggtttccttcatgttctgttaaaagaggaacattcagagagatatcttcatcacacctctgccacttatcaccttctccttccattga |
10843581 |
T |
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| Q |
123 |
tagtttcaagaaaga |
137 |
Q |
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| T |
10843582 |
tattttcaaggaaga |
10843596 |
T |
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