View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042_low_41 (Length: 238)
Name: NF5042_low_41
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 17269874 - 17269940
Alignment:
| Q |
156 |
gtaatagataatgaatagaataatggttagtgcaagctctgatggccgacctgatacgccaatattt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17269874 |
gtaatagataatgaatagaataatggttagtgcaagctctgatggccgacctgatacgccaatattt |
17269940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17269721 - 17269789
Alignment:
| Q |
1 |
aattcaaatataaatggaggggtcgaggttcttatcccggtcacagcatcaggtctaacgagtttaaat |
69 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17269721 |
aattcaaatataaatggaggggccgaggttcttatcccggtcacatcatcaggtctaacgagtttaaat |
17269789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University