View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042_low_42 (Length: 229)
Name: NF5042_low_42
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 758033 - 758114
Alignment:
| Q |
85 |
tgagatttttctttgataggggtaaattacatgcaattcatcaaaggataatatatgaaagactgtcaacgaaatattaata |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| || ||||||||| |
|
|
| T |
758033 |
tgagatttttctttgataggggtaaattacatgcaattcatcaaggggtaatatatgaaaaactgtcaaagacatattaata |
758114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 757952 - 758008
Alignment:
| Q |
8 |
ttgaatgaagcagatgaataaatttaaggttcttgagatgaaaatgataactaattt |
64 |
Q |
| |
|
|||||||||| |||| |||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
757952 |
ttgaatgaaggagataaataaatttaagatttttgagatgaaaatgataactaattt |
758008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 34891598 - 34891544
Alignment:
| Q |
8 |
ttgaatgaagcagatgaataaatttaaggttcttgagatgaaaatgataactaat |
62 |
Q |
| |
|
|||||||||| ||||||| |||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
34891598 |
ttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaat |
34891544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 7556126 - 7556177
Alignment:
| Q |
8 |
ttgaatgaagcagatgaataaatttaaggttcttgagatgaaaatgataact |
59 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
7556126 |
ttgaatgaatgatatgaataaatttaatgttcttgagatgaaaatgacaact |
7556177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 973176 - 973121
Alignment:
| Q |
8 |
ttgaatgaagcagatgaataaatttaaggttcttgagatgaaaatgataactaatt |
63 |
Q |
| |
|
|||||| ||| ||||||| |||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
973176 |
ttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataactaatt |
973121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 972883 - 972838
Alignment:
| Q |
19 |
agatgaataaatttaaggttcttgagatgaaaatgataactaattt |
64 |
Q |
| |
|
||||||| || ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
972883 |
agatgaagaagtttgatgttcttgagatgaaaatgataactaattt |
972838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 37077706 - 37077661
Alignment:
| Q |
19 |
agatgaataaatttaaggttcttgagatgaaaatgataactaattt |
64 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
37077706 |
agatgaagaagtttaatgttcttgagatgaaaatgataactgattt |
37077661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 16863523 - 16863470
Alignment:
| Q |
6 |
tattgaatgaagcagatgaataaatttaaggttcttgagatgaaaatgataact |
59 |
Q |
| |
|
|||||||| ||| ||||||| |||||| | |||||||||||||||||| ||||| |
|
|
| T |
16863523 |
tattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaact |
16863470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University