View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5042_low_5 (Length: 541)
Name: NF5042_low_5
Description: NF5042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5042_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 25 - 527
Target Start/End: Complemental strand, 30942321 - 30941819
Alignment:
| Q |
25 |
taccatagacaaaggaatattcaagaaaattgaatattactagagctggattcttcacttcccttgctttgacttgtgcttttctttttcttcttataag |
124 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942321 |
taccatagacaaaggaatattcaagaaaattgaatattactggagctggattcttcacttcccttgctttgacttgtgcttttctttttcttcttataag |
30942222 |
T |
|
| Q |
125 |
gtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtatcaggagacccaccattttc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942221 |
gtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtatcaggagacccaccattttc |
30942122 |
T |
|
| Q |
225 |
ttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
30942121 |
ttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaagtacaaggtgcaggtggttctggttgtccataa |
30942022 |
T |
|
| Q |
325 |
aacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942021 |
aacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactg |
30941922 |
T |
|
| Q |
425 |
gtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatga |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941921 |
gtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatga |
30941822 |
T |
|
| Q |
525 |
tgt |
527 |
Q |
| |
|
||| |
|
|
| T |
30941821 |
tgt |
30941819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 37974981 - 37974937
Alignment:
| Q |
444 |
gtattgaccaaaagtgttccaatctcttctcttttgtgattcgta |
488 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| ||||| |
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|
| T |
37974981 |
gtattgaccaaaagtgttccaatcacgtctcttttgtgactcgta |
37974937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 98 - 500
Target Start/End: Complemental strand, 39556759 - 39556357
Alignment:
| Q |
98 |
ttgtgcttttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaagg |
197 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||| ||||| || || ||||| | ||| || || ||||| |
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|
| T |
39556759 |
ttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcgaaagg |
39556660 |
T |
|
| Q |
198 |
attagtatcaggagacccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacac |
297 |
Q |
| |
|
|||||| || |||| || || ||||| ||||||||||||||||| || ||||| |||||||| | |||||||||||||||||||| ||||| ||||| |
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|
| T |
39556659 |
attagtctctggagttccgccgttttcctcataagcagcccttaacctcccaattagagcatcaagacttccccaagcttgtctaagtggacatgtacaa |
39556560 |
T |
|
| Q |
298 |
ggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggt |
397 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||||||| |||||| || |||||||||||||| ||||| || | ||| || ||||| ||||||| |
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|
| T |
39556559 |
ggtgctggtggctctggctgtccataaaacatacaaccttgtaaatgaactttggtttttccaaattgatctaaatacctaagaaattccaacacatggt |
39556460 |
T |
|
| Q |
398 |
tgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaag |
497 |
Q |
| |
|
|| |||||| || ||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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|
| T |
39556459 |
tggaattgcagtgagaaagtggaacgggtggtcttaggttgtttaagtattgaccaaaagtgttccaatctcttctcttttgagattcatagcggctaag |
39556360 |
T |
|
| Q |
498 |
tgt |
500 |
Q |
| |
|
||| |
|
|
| T |
39556359 |
tgt |
39556357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 106 - 497
Target Start/End: Original strand, 32002006 - 32002397
Alignment:
| Q |
106 |
ttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtat |
205 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||| ||||| | ||| | ||| |||| | |||||||||||||||||||||||||| | |
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|
| T |
32002006 |
ttctttttcttcttgtaaggaattcctctagccttagcttgagaatctctcacctcacgaagatagattcttatggaaccactagcaaaaggattagttt |
32002105 |
T |
|
| Q |
206 |
caggagacccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcagg |
305 |
Q |
| |
|
|||| | ||||||||||||||||||||||| |||||||||||||| || ||||| | ||||||||||||||| | |||||||| ||||| ||| |||| |
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|
| T |
32002106 |
caggtaatccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccagg |
32002205 |
T |
|
| Q |
306 |
tggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattg |
405 |
Q |
| |
|
|||||| | |||||| |||||| ||||||||||| || || || |||||||||||||| || ||||| | ||||| || | ||||||||| ||| |
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|
| T |
32002206 |
tggttcggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaattcaagaacatggtttgaatta |
32002305 |
T |
|
| Q |
406 |
cactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaag |
497 |
Q |
| |
|
|| | ||| |||| ||||||||||| || | |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
32002306 |
caatttgatagtgccactggtggtctttgattccttaagtattgtccaaaagtgttccaatctcttctcttttgtgactcgtatcgactaag |
32002397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 222 - 383
Target Start/End: Complemental strand, 4863290 - 4863129
Alignment:
| Q |
222 |
ttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtcca |
321 |
Q |
| |
|
||||||||||||||| |||| | ||| || || ||||| | || |||||||||||||| | ||||| ||||||||||| || || || |||||||| |
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|
| T |
4863290 |
ttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccg |
4863191 |
T |
|
| Q |
322 |
taaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaa |
383 |
Q |
| |
|
|||| || ||||| || | ||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
4863190 |
aaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaa |
4863129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 33672046 - 33672141
Alignment:
| Q |
213 |
cccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtgg |
308 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||| | ||||| | |||||||||||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
33672046 |
cccaccattttcttcaaaagcagctcttagtcttccaatcaatgcatcaagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtgg |
33672141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 368
Target Start/End: Complemental strand, 15970455 - 15970300
Alignment:
| Q |
213 |
cccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttct |
312 |
Q |
| |
|
||||||||| |||||| ||||||| || | ||| |||||||| ||||| | || ||||| ||||| | ||||||||| | ||| | ||||||||| | | |
|
|
| T |
15970455 |
cccaccattctcttcaaaagcagctctaagtctcccaataagtgcatcaagactaccccacgcttggcgaagaggacatggacatgatgcaggtggattt |
15970356 |
T |
|
| Q |
313 |
ggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtc |
368 |
Q |
| |
|
|| ||||||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
15970355 |
ggatgtccataaaagggacaaatcagagtatgaaccttagtttttccaaattggtc |
15970300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 35814703 - 35814540
Alignment:
| Q |
265 |
cttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaatt |
364 |
Q |
| |
|
|||||||||||||| | |||||||| | ||| ||||||||||| ||||||||| | || || |||||||| | ||||||||||| || ||||||| |
|
|
| T |
35814703 |
cttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtccaaagaagatgcaaccttgaaagtgaaccttagtcttaccaaatt |
35814604 |
T |
|
| Q |
365 |
ggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtgg |
428 |
Q |
| |
|
| || | ||||||||| ||||| | |||||||||| || || ||||| ||||||||| |||| |
|
|
| T |
35814603 |
gatcaaggtaacgaagaaaatcaagaacatggttgaagttacagtgtgatagtggaactagtgg |
35814540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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