View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5043-Insertion-1 (Length: 1180)

Name: NF5043-Insertion-1
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5043-Insertion-1
NF5043-Insertion-1
[»] chr5 (9 HSPs)
chr5 (8-590)||(39613839-39614420)
chr5 (804-927)||(39614742-39614868)
chr5 (655-722)||(39614485-39614552)
chr5 (340-502)||(39614336-39614492)
chr5 (858-922)||(36060247-36060313)
chr5 (858-927)||(36437394-36437465)
chr5 (304-394)||(27984349-27984439)
chr5 (858-927)||(19803624-19803694)
chr5 (858-926)||(42674141-42674211)
[»] chr8 (10 HSPs)
chr8 (219-446)||(4110946-4111173)
chr8 (219-429)||(9371700-9371909)
chr8 (858-927)||(3741575-3741645)
chr8 (858-927)||(14896594-14896665)
chr8 (858-927)||(32233593-32233664)
chr8 (862-927)||(34146152-34146219)
chr8 (858-900)||(43026767-43026810)
chr8 (858-926)||(29315946-29316016)
chr8 (506-540)||(29937350-29937384)
chr8 (506-551)||(4111006-4111051)
[»] chr1 (8 HSPs)
chr1 (236-390)||(28453433-28453587)
chr1 (222-425)||(17401042-17401244)
chr1 (236-445)||(35947250-35947458)
chr1 (858-927)||(36320022-36320092)
chr1 (506-564)||(28453425-28453483)
chr1 (858-927)||(52414878-52414949)
chr1 (858-927)||(23699507-23699578)
chr1 (856-927)||(1674822-1674894)
[»] chr3 (7 HSPs)
chr3 (330-401)||(22600943-22601014)
chr3 (858-927)||(5493516-5493587)
chr3 (858-923)||(25342433-25342500)
chr3 (858-927)||(45646563-45646634)
chr3 (862-909)||(37031037-37031084)
chr3 (858-929)||(21959731-21959804)
chr3 (858-910)||(34668645-34668698)
[»] chr2 (7 HSPs)
chr2 (858-927)||(15507416-15507486)
chr2 (307-385)||(16597474-16597552)
chr2 (858-927)||(11074009-11074080)
chr2 (858-927)||(4316661-4316733)
chr2 (858-944)||(150313-150402)
chr2 (858-927)||(25965927-25965998)
chr2 (877-927)||(44898095-44898146)
[»] chr7 (9 HSPs)
chr7 (219-394)||(6452418-6452592)
chr7 (857-927)||(37124136-37124208)
chr7 (858-927)||(3835717-3835788)
chr7 (858-927)||(14771462-14771533)
chr7 (858-927)||(15221914-15221985)
chr7 (858-927)||(15643298-15643369)
chr7 (858-927)||(35793163-35793234)
chr7 (859-927)||(4567280-4567350)
chr7 (889-927)||(16196781-16196819)
[»] chr6 (2 HSPs)
chr6 (319-446)||(3374669-3374786)
chr6 (858-927)||(26252671-26252742)
[»] chr4 (3 HSPs)
chr4 (858-927)||(45666264-45666335)
chr4 (858-927)||(6949056-6949127)
chr4 (858-927)||(19443622-19443693)
[»] scaffold0188 (1 HSPs)
scaffold0188 (858-910)||(6461-6514)
[»] scaffold0118 (1 HSPs)
scaffold0118 (858-957)||(14884-14988)


Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Original strand, 39613839 - 39614420
Alignment:
8 atacctacaaatactttgatactcaaatatgcacttaatcaagcccataaattaagtttcgaagtcgaaagagtggctattgtgannnnnnnncttattg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||        |||||||    
39613839 atacctacaaatactttgatactcaaatatgcacttaatcaagcccataaattacgttttgaagtcgaaagagtagttattgtgattatttttcttattg 39613938  T
108 attaagtttagggataaatattcttcccgtgcttacaaagtttgtgataattcgtttaatcattatgctatattgaccagtgat-caaaagtgaggcgct 206  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| | | | ||||||||| |||||    
39613939 attaagtttagggataaatattcttctggtgcttacaaaatttgtgataattcgtttaatcattatgctatattgaccgggggttcaaaagtgaagcgct 39614038  T
207 cnnnnnnnncatttaatttggtttatatgtgtgtgagttatctggcaagagtgaaatgacagggtttttaaccatacggagaaattgatgtctcaactgc 306  Q
    |        |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
39614039 cttttttt-catttaatttggtttacatgtgtgtgagttatatggcaagagcgaaatgacagggtttttaatcatacggagaaattgatgtctcaactgc 39614137  T
307 ttgataaggttaaatatttgtttttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcccctttgattgta 406  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||     
39614138 ttgataaggttaaatatttatctttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgctggttggtggcagcgccccctttgattgtc 39614237  T
407 tgggtgttgtttaattgtattgttttgtttcttttttatccgtgctctaaatctttaatgtgtgctgattttttgttatgtgtatttgaattctttgctt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||| |||||||||||||||||||||||||    
39614238 tgggtgttgtttaattgtattgttttgtttcttttttatccgtgctctaaatctttaatgtgtattgggttttt-ttatgtgtatttgaattctttgctt 39614336  T
507 gaagcataagactggaaatgtttctcttgagtttgttggtcggtgacagcgcctctttaattgtcagattgttgattaattgta 590  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||| ||||||||||    
39614337 gaagcataagactgcaaatgtttctcttgagtttgttggtcggtggcaacgcctctttgattgtcagagtgttaattaattgta 39614420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 804 - 927
Target Start/End: Original strand, 39614742 - 39614868
Alignment:
804 acttagcccctttgtgaaaaatcatataacttcactaccactccctcgatttc-ttttaactgtcgttttggta-tttaaagttacgatttgtcaattat 901  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||    
39614742 acttagtccctttgtgaaaaatcatataacttcactaccactccctcgatttctttttaactgtcgttttggtattttaaagatacgatttgtcaattat 39614841  T
902 atcctttg-taattactcttatctttt 927  Q
    |||||||| ||||||||||||||||||    
39614842 atcctttgttaattactcttatctttt 39614868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 655 - 722
Target Start/End: Original strand, 39614485 - 39614552
Alignment:
655 aactctttactttttctcggtacaccttgtgctgagaatgtgacttttcgtggtgtttttgacttgtt 722  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
39614485 aactctttactttttctcggtacaccttgtgctgagaatgtgacttttcgtggtatttttgacttgtt 39614552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 340 - 502
Target Start/End: Original strand, 39614336 - 39614492
Alignment:
340 tgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcccctttgattgtatgggtgttgtttaattgtattgttttgtttctt 439  Q
    |||||||||||   ||||||||||||||||||||||||||| ||||||| |  || ||||||||||  | |||||  |||||||||||||||||    ||    
39614336 tgaagcataagactgcaaatgtttctcttgagtttgttggtcggtggcaacg-cctctttgattgtcagagtgttaattaattgtattgttttg----tt 39614430  T
440 ttttatccgtgctctaaatctttaatgtgtgctgattttttgttatgtgtatttgaattcttt 502  Q
    ||||||| ||||||| |||| |||||| ||| || ||||||||| | |||||||||| |||||    
39614431 ttttatcagtgctct-aatcattaatgggtgttggttttttgttttatgtatttgaactcttt 39614492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 858 - 922
Target Start/End: Complemental strand, 36060313 - 36060247
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttat 922  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||| ||||||| ||||||||||||    
36060313 tttaactgtcgttttggtattttaagtgtacgatttgtcgattataccctttgtcaattactcttat 36060247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 36437465 - 36437394
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||  |||||||| ||||||||||||||| | |||||||||||||||||    
36437465 tttaactgtctttttggtattttaagcgtacgatttttcaattatatcctttatcaattactcttatctttt 36437394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 27984439 - 27984349
Alignment:
304 tgcttgataaggttaaatatttgtttttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcc 394  Q
    |||| |||||||| |||||| ||| ||| | ||||||||||||||| |  |||  ||| ||| ||||||||| ||||||||||||||||||    
27984439 tgctcgataaggtcaaatatgtgtctttctcgtggctgaagcataatgctgcatttgtatcttttgagtttgctggttggtggcagcatcc 27984349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 19803624 - 19803694
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||  |||||||||||||||||| ||||||| ||||||| |||||||||    
19803624 tttaactgtc-ttttggtattttaagggtacgatttgtcaattataccctttgtcaattacttttatctttt 19803694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 858 - 926
Target Start/End: Complemental strand, 42674211 - 42674141
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatcttt 926  Q
    |||||||||| |||||||| ||||| | ||| |||||||||| ||| ||||||| ||||||||||||||||    
42674211 tttaactgtctttttggtattttaagggtacaatttgtcaatgataccctttgtcaattactcttatcttt 42674141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 2e-49; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 219 - 446
Target Start/End: Complemental strand, 4111173 - 4110946
Alignment:
219 ttaatttggtttatatgtgtgtgagttatctggcaagagtgaaatgacaggg-tttttaaccatacggagaaattgatgtctcaactgcttgataaggtt 317  Q
    |||||||||||||  |||||||| ||||| ||||||||||||||||| |||| ||||||| |||| |||||| || |||  |||  | ||| | ||||||    
4111173 ttaatttggtttacttgtgtgtgggttatttggcaagagtgaaatgataggggtttttaatcataaggagaagtttatgcatcagtttcttaacaaggtt 4111074  T
318 aaatatttgtttttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcccctttgattgtatgggtgttgtt 417  Q
    |||||||||| |||||||||| |||||||||| |  | ||||||||||||||||||||||||||||||||| || ||| ||||||||| |||| | || |    
4111073 aaatatttgtctttgtggtgggtgaagcataatgctgaaaatgtttctcttgagtttgttggttggtggcaaca-cccttttgattgtttgggcggtggt 4110975  T
418 taattgtattgttttgtttcttttttatc 446  Q
    |||||||||||||||||||||||||||||    
4110974 taattgtattgttttgtttcttttttatc 4110946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 219 - 429
Target Start/End: Complemental strand, 9371909 - 9371700
Alignment:
219 ttaatttggtttatatgtgtgtgagttatctggcaagagtgaaatgacagggtttttaaccatacggagaaattgatgtctcaactgcttgataaggtta 318  Q
    |||||||||||||  | |||||| |||||||| |||||   |||||||   | |||||| |||| ||| ||| |||||  |||| ||||| |||| ||||    
9371909 ttaatttggtttacctatgtgtgggttatctgacaagaccaaaatgacctagcttttaatcataaggataaaatgatgcatcaattgcttaataaagtta 9371810  T
319 aatatttgtttttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcccctttgattgtatgggtgttgttt 418  Q
    ||||||||| |||||||| |||||||||||||  ||||||||||||| ||||||||| || |||||||||||| ||||||||||||| || ||||||  |    
9371809 aatatttgtctttgtggttgctgaagcataagaccgcaaatgtttctattgagtttgctgcttggtggcagca-cccctttgattgtctgtgtgttggat 9371711  T
419 aattgtattgt 429  Q
    |||||| ||||    
9371710 aattgtgttgt 9371700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 3741575 - 3741645
Alignment:
858 tttaactgtcgttttggtatttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||||||||||||||| ||  |||||||||||||||||| | ||||| | |||||| ||||||||    
3741575 tttaactgtcgttttggtattttaaagtacgatttgtcaattataccatttgtcagttactcgtatctttt 3741645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 14896594 - 14896665
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| |||||||| ||||| || | |||||||||| |||||| ||||| |||||||||||||||||    
14896594 tttaactgtcattttggtattttaaggtgatgatttgtcaaatatatcatttgtcaattactcttatctttt 14896665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 32233593 - 32233664
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||  |  ||||||||||||||| ||||||| |||||||||||||||||    
32233593 tttaactgtctttttggtattttaagggtgtgatttgtcaattataccctttgtcaattactcttatctttt 32233664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 862 - 927
Target Start/End: Original strand, 34146152 - 34146219
Alignment:
862 actgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||| ||||||||||| |||  ||||||||||||||||||  |||||| |||||||||||||||||    
34146152 actgtctttttggtattttaagggtacgatttgtcaattatactctttgtcaattactcttatctttt 34146219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 900
Target Start/End: Complemental strand, 43026810 - 43026767
Alignment:
858 tttaactgtcgttttggtattt-aaagttacgatttgtcaatta 900  Q
    ||||||||||||||| |||||| |||||||||||||||||||||    
43026810 tttaactgtcgttttagtattttaaagttacgatttgtcaatta 43026767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 858 - 926
Target Start/End: Complemental strand, 29316016 - 29315946
Alignment:
858 tttaactgtcgttttggtatttaaag-ttacgatttgtcaattatatcctttgt-aattactcttatcttt 926  Q
    ||||||||||||||| |||||| |||  |||||||| ||||||||| ||||||| |||||||| |||||||    
29316016 tttaactgtcgttttagtattttaagagtacgatttttcaattataccctttgtcaattactcgtatcttt 29315946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 29937350 - 29937384
Alignment:
506 tgaagcataagactggaaatgtttctcttgagttt 540  Q
    ||||||||||||||| |||||||||||||||||||    
29937350 tgaagcataagactgtaaatgtttctcttgagttt 29937384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 4111051 - 4111006
Alignment:
506 tgaagcataagactggaaatgtttctcttgagtttgttggtcggtg 551  Q
    ||||||||||  ||| ||||||||||||||||||||||||| ||||    
4111051 tgaagcataatgctgaaaatgtttctcttgagtttgttggttggtg 4111006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 236 - 390
Target Start/End: Complemental strand, 28453587 - 28453433
Alignment:
236 tgtgtgagttatctggcaagagtgaaatgacagggtttttaaccatacggagaaattgatgtctcaactgcttgataaggttaaatatttgtttttgtgg 335  Q
    |||||| |||||||| |||||||||||||||| ||||||||| |||  |||||| | |||| ||||  | |||||||||||||||||||||| |||||||    
28453587 tgtgtgggttatctgacaagagtgaaatgacatggtttttaatcattaggagaagtcgatgcctcagttacttgataaggttaaatatttgtctttgtgg 28453488  T
336 tggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagc 390  Q
    ||||||||||||||||  | ||||||||||||| |||||| |||| |||||||||    
28453487 tggctgaagcataaggctggaaatgtttctcttaagtttgatggtcggtggcagc 28453433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 222 - 425
Target Start/End: Original strand, 17401042 - 17401244
Alignment:
222 atttggtttatatgtgtgtgagttatctggcaagagtgaaatgacagggtttttaaccatacggagaaattgatgtctcaactgcttgataaggttaaat 321  Q
    ||||||||||   ||||||| ||||||||||||||||||| ||||| | | ||||| |||| ||||||||||||| || || || ||||||||||||||     
17401042 atttggtttaccggtgtgtgggttatctggcaagagtgaactgacaagttgtttaatcataaggagaaattgatgccttaattgtttgataaggttaaac 17401141  T
322 atttgtttttgtggtg-gctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcccctttgattgtatgggtgttgtttaa 420  Q
    |||||| |||||||||  ||||||| ||| |  |||||||||||||||||||||| | |||||||| |||  ||||||||||||| || |||||| ||||    
17401142 atttgtctttgtggtgacctgaagcgtaaaggtgcaaatgtttctcttgagtttgctagttggtgggagc--cccctttgattgtttgagtgttggttaa 17401239  T
421 ttgta 425  Q
    |||||    
17401240 ttgta 17401244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 236 - 445
Target Start/End: Complemental strand, 35947458 - 35947250
Alignment:
236 tgtgtgagttatctggcaagagtgaaatgacagggtttttaaccatacggagaaattgatgtctcaactgcttgataaggttaaatatttgtttttgtgg 335  Q
    ||||||||||||||| |||||||||||||||||| |||||||  ||| ||| |||| || ||||||  || |||||| |||||||||||||| |||||||    
35947458 tgtgtgagttatctgacaagagtgaaatgacaggttttttaattataaggaaaaatcgacgtctcagttgtttgatatggttaaatatttgtctttgtgg 35947359  T
336 tggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcccctttgattgtatgggtgttgtttaattgtattgttttgtt 435  Q
    |||||||||||||||     |||||||||  |||||||||    |||||||||||  ||| ||||||  | ||||||||| ||||||||| |||||||||    
35947358 tggctgaagcataagactttaaatgtttcagttgagtttgccaattggtggcagc-ccccttttgatcatttgggtgttggttaattgtaatgttttgtt 35947260  T
436 tcttttttat 445  Q
    ||||||||||    
35947259 tcttttttat 35947250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 36320092 - 36320022
Alignment:
858 tttaactgtcgttttggtatttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||| | ||||| |||||||||||||||||    
36320092 tttaactgtctttttggtattttaaggtacgatttgtcaattataccatttgtcaattactcttatctttt 36320022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 506 - 564
Target Start/End: Complemental strand, 28453483 - 28453425
Alignment:
506 tgaagcataagactggaaatgtttctcttgagtttgttggtcggtgacagcgcctcttt 564  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||| ||||    
28453483 tgaagcataaggctggaaatgtttctcttaagtttgatggtcggtggcagcgccccttt 28453425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 52414878 - 52414949
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||||||||||||||| ||||| | || ||||||||||||||| ||||||| |||||||| ||||||||    
52414878 tttaactgtcgttttggtattttaagggtatgatttgtcaattataacctttgtcaattactcgtatctttt 52414949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 23699578 - 23699507
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||| |||||||| |||||| |||  |||||||||||||||||| ||||||| |||||||| ||||||||    
23699578 tttaacagtcgtttttgtattttaaggatacgatttgtcaattataccctttgtcaattactcgtatctttt 23699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 856 - 927
Target Start/End: Complemental strand, 1674894 - 1674822
Alignment:
856 cttttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||||||||||||| ||| ||||| | |||||||||||||||||| ||||||| ||||| |||||| ||||    
1674894 cttttaactgtcgttttagtattttaagggtacgatttgtcaattata-cctttgtcaattattcttatatttt 1674822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 8e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 330 - 401
Target Start/End: Complemental strand, 22601014 - 22600943
Alignment:
330 ttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcccctttga 401  Q
    ||||||||||||||||||||||| ||||||  |||| |||||||||||||||||||||||| |||| |||||    
22601014 ttgtggtggctgaagcataaggttgcaaataattcttttgagtttgttggttggtggcagcgtcccttttga 22600943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 5493516 - 5493587
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||  |||||||||||||||||| ||||||| |||||||||||||||||    
5493516 tttaactgtctttttggtattttaagggtacgatttgtcaattataccctttgtcaattactcttatctttt 5493587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 858 - 923
Target Start/End: Complemental strand, 25342500 - 25342433
Alignment:
858 tttaactgtcgttttggtattt-aaagttacgatttgtcaattatatcctttgt-aattactcttatc 923  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||    
25342500 tttaaccgtcgttttggtattttaaaggtacgatttgtcaattatatcctttgtcaattacttttatc 25342433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 45646563 - 45646634
Alignment:
858 tttaactgtcgttttggtattt-aaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| ||||||| || ||||||    
45646563 tttaactgtctttttggtattttaaaggtacgatttgtcaattataccctttgtcaattacttttttctttt 45646634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 862 - 909
Target Start/End: Complemental strand, 37031084 - 37031037
Alignment:
862 actgtcgttttggtatttaaagttacgatttgtcaattatatcctttg 909  Q
    |||||| ||||||||||| || ||||||||||||||||||| ||||||    
37031084 actgtctttttggtattttaaattacgatttgtcaattataccctttg 37031037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 858 - 929
Target Start/End: Complemental strand, 21959804 - 21959731
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatcttttca 929  Q
    ||||||||||||||||||| ||||| | || ||||| ||||||||| ||||||| ||||| |||||| ||||||    
21959804 tttaactgtcgttttggtattttaagggtatgatttatcaattataccctttgtcaattattcttatattttca 21959731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 858 - 910
Target Start/End: Original strand, 34668645 - 34668698
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt 910  Q
    |||||||||| |||| |||||| |||| |||||||||||||||||| |||||||    
34668645 tttaactgtctttttagtattttaagtgtacgatttgtcaattataccctttgt 34668698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 15507416 - 15507486
Alignment:
858 tttaactgtcgttttggtatttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||||||| |||||||||||| | || ||||||||||||||| ||||||| |||||||||||||||||    
15507416 tttaactgtcgatttggtatttaagggtatgatttgtcaattataccctttgtcaattactcttatctttt 15507486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 307 - 385
Target Start/End: Original strand, 16597474 - 16597552
Alignment:
307 ttgataaggttaaatatttgtttttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtg 385  Q
    ||||||| ||||||||||||| ||||||||| ||||| |||||| |   |||||||||||||||||||| |||||||||    
16597474 ttgataaagttaaatatttgtctttgtggtgactgaaacataagattataaatgtttctcttgagtttgctggttggtg 16597552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 11074080 - 11074009
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||  ||| |||||||||||||| ||||||| |||||||||||||||||    
11074080 tttaactgtctttttggtattttaagggtacaatttgtcaattataccctttgtcaattactcttatctttt 11074009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 4316661 - 4316733
Alignment:
858 tttaactgtcgttttggtattt--aaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||||||||||||||||||  || | |  ||||||||||||||||| ||||| |||||||||||||||||    
4316661 tttaactgtcgttttggtatttttaaggatgtgatttgtcaattatatcttttgtcaattactcttatctttt 4316733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 944
Target Start/End: Complemental strand, 150402 - 150313
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatcttttca--caaactaattaatgt 944  Q
    |||||||||| |||||||| ||||| | ||||||| |||||||||| ||||||| |||||||||||| ||||||   ||||||||||||||    
150402 tttaactgtctttttggtattttaagggtacgattcgtcaattataccctttgtcaattactcttat-ttttcaataaaactaattaatgt 150313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 25965998 - 25965927
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||| |||||||||||||| |||  ||||||||||||| |||| ||||||| |||||||||||| ||||    
25965998 tttaactatcgttttggtattttaagggtacgatttgtcaactataccctttgtcaattactcttatatttt 25965927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 44898095 - 44898146
Alignment:
877 tttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||| |||||||| ||||||||| ||||||| |||||||||||||||||    
44898095 tttaaaggtacgatttttcaattataccctttgtcaattactcttatctttt 44898146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 394
Target Start/End: Original strand, 6452418 - 6452592
Alignment:
219 ttaatttggttta-tatgtgtgtgagttatctggcaagagtgaaatgacagggtttttaaccatacggagaaattgatgtctcaactgcttgataaggtt 317  Q
    ||||||||||||| ||| |||||| ||||| ||||||||  | ||||| || ||||||||||| | | |||||| ||| || ||  |||| ||||| ||     
6452418 ttaatttggtttactat-tgtgtgggttatttggcaagaacgtaatgatagtgtttttaaccaaaggaagaaatcgatatcacat-tgctggataacgtc 6452515  T
318 aaatatttgtttttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcc 394  Q
    |||||| ||| ||| ||||||||||||||||| || |||   |||||| |||| |||| ||||||||||||||||||    
6452516 aaatatgtgtctttatggtggctgaagcataacgttgcattcgtttcttttgattttgatggttggtggcagcatcc 6452592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 857 - 927
Target Start/End: Original strand, 37124136 - 37124208
Alignment:
857 ttttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||| || ||||||||||| |||  ||| |||||||||||||| ||||||| |||||||||||||||||    
37124136 ttttaactttctttttggtattttaagggtacaatttgtcaattataccctttgtaaattactcttatctttt 37124208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 3835788 - 3835717
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||  |||||||||||||||||| ||| ||| ||| |||||||||||||    
3835788 tttaactgtctttttggtattttaagggtacgatttgtcaattataccctctgtcaatcactcttatctttt 3835717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 14771533 - 14771462
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||||||||||||||| ||||| | || ||||||||||||||| ||||||| ||||| |||||| ||||    
14771533 tttaactgtcgttttggtattttaagggtatgatttgtcaattataccctttgtcaattattcttatatttt 14771462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 15221985 - 15221914
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||||||||||||||| ||||| | || ||||||||||||||| ||||||| ||||| |||||| ||||    
15221985 tttaactgtcgttttggtattttaagggtatgatttgtcaattataccctttgtcaattattcttatatttt 15221914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 15643298 - 15643369
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||||||||||||||| ||||| | |||||||| ||||||||| ||||| | |||||||||||| ||||    
15643298 tttaactgtcgttttggtattttaagggtacgatttctcaattataccctttatcaattactcttatttttt 15643369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 35793234 - 35793163
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||  |  ||||||||||||||| ||||||| |||||||||||||||||    
35793234 tttaactgtctttttggtattttaagggtgtgatttgtcaattataccctttgtcaattactcttatctttt 35793163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 859 - 927
Target Start/End: Original strand, 4567280 - 4567350
Alignment:
859 ttaactgtcgttttggtatttaaag-ttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    ||||||||| ||||||||||| ||| |||||||||||| |||||| ||||||| || |||| |||||||||    
4567280 ttaactgtctttttggtattttaaggttacgatttgtcgattataccctttgtcaactacttttatctttt 4567350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 889 - 927
Target Start/End: Original strand, 16196781 - 16196819
Alignment:
889 atttgtcaattatatcctttgtaattactcttatctttt 927  Q
    |||||||||||||| ||||||| ||||||||||||||||    
16196781 atttgtcaattataccctttgtcattactcttatctttt 16196819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 319 - 446
Target Start/End: Original strand, 3374669 - 3374786
Alignment:
319 aatatttgtttttgtggtggctgaagcataaggtcgcaaatgtttctcttgagtttgttggttggtggcagcatcccctttgattgtatgggtgttgttt 418  Q
    |||||||||||||||||||||||| ||||||||  ||| |||||||||||||        |||||| | ||| |   |||||||||| ||||||||| ||    
3374669 aatatttgtttttgtggtggctgaggcataagggtgcagatgtttctcttga--------gttggtcggagcgt--tctttgattgtttgggtgttgctt 3374758  T
419 aattgtattgttttgtttcttttttatc 446  Q
    |||||||||||| | |||||||||||||    
3374759 aattgtattgttctatttcttttttatc 3374786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 26252742 - 26252671
Alignment:
858 tttaactgtcgttttggtattt-aaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||| | ||||| |||||||| ||||||||    
26252742 tttaactgtcgttttgatattttaaaggtacgatttgtcaattataccatttgtcaattactcgtatctttt 26252671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 45666264 - 45666335
Alignment:
858 tttaactgtcgttttggtattt-aaagttacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| ||||||| |||||||||    
45666264 tttaactgtctttttggtattttaaaggtacgatttgtcaattataccctttgtcaattacttttatctttt 45666335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 858 - 927
Target Start/End: Original strand, 6949056 - 6949127
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| ||||  ||||||||||||||||| | ||||| |||||||||||||||||    
6949056 tttaactgtctttttggtattttaagtgcacgatttgtcaattataccatttgtcaattactcttatctttt 6949127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 858 - 927
Target Start/End: Complemental strand, 19443693 - 19443622
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt-aattactcttatctttt 927  Q
    |||||||||| ||||||||||| |||  |||||||||||||||||| ||||||| ||||||| |||||||||    
19443693 tttaactgtctttttggtattttaaggatacgatttgtcaattataccctttgtcaattacttttatctttt 19443622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 858 - 910
Target Start/End: Complemental strand, 6514 - 6461
Alignment:
858 tttaactgtcgttttggtatttaaagt-tacgatttgtcaattatatcctttgt 910  Q
    |||||||||||||||||||||| |||| || ||||| |||||||||||||||||    
6514 tttaactgtcgttttggtattttaagtgtatgatttatcaattatatcctttgt 6461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 858 - 957
Target Start/End: Original strand, 14884 - 14988
Alignment:
858 tttaactgtcgttttggta-tttaaagttacgatttgtcaattatatcctttgt-aattactcttatcttttca--caaactaattaatg-tatacattt 952  Q
    ||||||||||||||||||| ||||| | || ||||||||||||||| | ||||| |||||| || |||||||||   ||||||||||||| |||| ||||    
14884 tttaactgtcgttttggtattttaagggtatgatttgtcaattataccttttgtcaattaccctcatcttttcaataaaactaattaatgttatatattt 14983  T
953 ggaaa 957  Q
    |||||    
14984 ggaaa 14988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University