View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5043-Insertion-2 (Length: 1129)
Name: NF5043-Insertion-2
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5043-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 895; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 895; E-Value: 0
Query Start/End: Original strand, 8 - 1048
Target Start/End: Original strand, 5040404 - 5041455
Alignment:
| Q |
8 |
caactttggctagaaaattaataaagatcagatacattaatcattgtctttgataacaatgaaatgattagagatcatcatgaattcatgataataatca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5040404 |
caactttggctagaaaattaataaagatcagatacattaatcattgtctttgataataatgaaatgattagagatcatcatgaattcatgataatattca |
5040503 |
T |
|
| Q |
108 |
tgtcaaccctgtgaatgaggattgtgattactagggatcatttgcatgggaaaagaagggttaaaagagaaagcaatactagttggattacaatccatag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040504 |
tgtcaaccctgtgaatgaggattgtgattactagggatcatttgcatgggaaaagaagggttaaaagagaaagcaatactagttggattacaatccatag |
5040603 |
T |
|
| Q |
208 |
cattaactttgttacctaaattttcaagtgccttaacctgtgaccttaaaaacttgagataatttgcagcttcatcaagcattgaagcagtgtccatttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040604 |
cattaactttgttacctaaattttcaagtgccttaacctgtgaccttaaaaacttgagataatttgcagcttcatcaagcattgaagcagtgtccatttt |
5040703 |
T |
|
| Q |
308 |
gcttccaccaggtacaatcttttgcaaaaccctaattctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatcttt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
5040704 |
gcttccaccaggtacaatcttttgcaaaaccctaattctttcacttattctttctcttctatgccttgcagcaacagtttgaggatcatttgatatcttt |
5040803 |
T |
|
| Q |
408 |
acattcttcctcttaggcnnnnnnncaattacatcaatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcattt |
507 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040804 |
acattcttcctcttcggctttttttcaattacatcaatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcattt |
5040903 |
T |
|
| Q |
508 |
gtgctattgcttctggatcagcttcttcaattgaagaagaacagcacattgatgatgaatttggttgttgaaaattaatattagttgaacaaggtccctt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5040904 |
gtgctattgcttctggatcagcttcttcaattgaagaagaacagcacattgatgatgaatttggttgttgaaaattaatattagttgaacaaggtccctt |
5041003 |
T |
|
| Q |
608 |
atcacatcttggtttcttgcattttggtggtttatcagtgataagtctaaaaccaccttcaacaggtgaagaattatgaatagtacttgattgtattgct |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5041004 |
atcacatcttggtttcttgcattttggtggtttatcagtgataagtctaaaaccaccttcaacaggtgaagaattatgaatagtacttgattgtattgct |
5041103 |
T |
|
| Q |
708 |
tttcttggatggatgtattgatctgaggaactttgagagattgtttcatcaaattcattgagtggacactgaatgtttttgtttccagtaccctctgtag |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5041104 |
tttcttggatggatgtattgatctgaggaactttgagagattgtttcatcaaattcattgagtggacactgaatgtttttgtttccagtaccctctgtag |
5041203 |
T |
|
| Q |
808 |
cactgacacttctgatcgaaggcgtgtctggtgtttgcgtccgtgtttgtgtcagtgcttcgtagcttgtactgtttg-aacattactatcagtttcacc |
906 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
5041204 |
cactgacacttttgatcgaagacgtgtctggtgttcgcatctgtgtttgtgtcagtgcttcgtagcttgtactgtttgaaacattactatcagtttcacc |
5041303 |
T |
|
| Q |
907 |
tgagga-gttgctgtg-tactgacataactgaag-tccataag-ttttgcagtcagaaaatagctttgaaattccatcattatca-tttcgacagaa-tg |
1000 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
5041304 |
tgaggaggttgctgtgttactgacataactgaagttccataagtttttgcagtcagaaaatagctttgaaattccatcattatcattttcgacagaagtg |
5041403 |
T |
|
| Q |
1001 |
tctgtg-tactgttagta-ctgaaagc-aacaatc-aaagactcaaaagagt |
1048 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||| |||||||||||||||| |
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|
| T |
5041404 |
tctgtgttactgttagtacctgaaagcaaacaatcaaaagactcaaaagagt |
5041455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 841
Target Start/End: Complemental strand, 14229647 - 14229606
Alignment:
| Q |
800 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
841 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
14229647 |
ctctatagcactgacacttctgatcgaaggcatgtccggtgt |
14229606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 257 - 537
Target Start/End: Original strand, 43186976 - 43187247
Alignment:
| Q |
257 |
aaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacctatt |
356 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||| || ||||| ||||||| |||| |
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|
| T |
43186976 |
aaacttgaggtaattagcagcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaatcttctgcaagactctaatcctttcacttatt |
43187075 |
T |
|
| Q |
357 |
ctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnnnnncaattacatcaatatcatccattc |
456 |
Q |
| |
|
||||||||||| || || || || |||||||||||||| ||||||||||| ||||||||||| |||||| || ||||| | |||| | |
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| T |
43187076 |
ctttcccttctttgcctagccgccacagtttgtggatcctttgatatcttaacattcttccttttaggctt--------ttccatca----cttccaaac |
43187163 |
T |
|
| Q |
457 |
caaaat---tcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttcaa |
537 |
Q |
| |
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| |||| |||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
43187164 |
ccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctggatcaggctcttcaa |
43187247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 276 - 421
Target Start/End: Complemental strand, 6259698 - 6259553
Alignment:
| Q |
276 |
gcttcatcaagcattgaagcagtgtccattttgcttccaccaggtac-aatcttttgcaaaaccctaattctttcacctattctttcccttctatgtctt |
374 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| ||||||||||||| ||||||| | || | ||| |||||||||| |||||||| |||||||||||| |
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|
| T |
6259698 |
gcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatcttt-gtaatatccttattctttcactaattctttctcttctatgtctt |
6259600 |
T |
|
| Q |
375 |
gcagcaacagtttgtggatcatttgatatctttacattcttcctctt |
421 |
Q |
| |
|
|| || ||| |||||||||| ||||| ||||| |||||||| ||||| |
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|
| T |
6259599 |
gctgctacactttgtggatcctttgaaatcttcacattctttctctt |
6259553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 800 - 841
Target Start/End: Complemental strand, 28136322 - 28136281
Alignment:
| Q |
800 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
841 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
28136322 |
ctctatagcactgacacttctgatcgaagacgtgtctggtgt |
28136281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 799 - 841
Target Start/End: Complemental strand, 13635682 - 13635640
Alignment:
| Q |
799 |
cctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
841 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
13635682 |
cctcagtagcactgacacttctgatagaaggcgtgtctggtgt |
13635640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 841
Target Start/End: Original strand, 14782796 - 14782837
Alignment:
| Q |
800 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
841 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
14782796 |
ctctgtagcaccgacacttctgatggaaagcgtgtctggtgt |
14782837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 803 - 841
Target Start/End: Complemental strand, 4785083 - 4785045
Alignment:
| Q |
803 |
tgtagcactgacacttctgatcgaaggcgtgtctggtgt |
841 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |
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| T |
4785083 |
tgtagcaccgacacttctgatcgaagacgtgtctggtgt |
4785045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 840
Target Start/End: Complemental strand, 18263604 - 18263563
Alignment:
| Q |
799 |
cctctgtagcactgacacttctgatcgaaggcgtgtctggtg |
840 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||| |||| |
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| T |
18263604 |
cctctgtagcaccgacacttctgatcgaagacgtgtcaggtg |
18263563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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