View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5043-Insertion-3 (Length: 966)
Name: NF5043-Insertion-3
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5043-Insertion-3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 810; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 810; E-Value: 0
Query Start/End: Original strand, 8 - 966
Target Start/End: Complemental strand, 34294269 - 34293311
Alignment:
| Q |
8 |
aactagaccggcaccaaatgcaaactcagcctccttgttaactttctggctcattggtttagctttgacaaagagtgtgcataagtcatgactagagtga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34294269 |
aactagaccggcaccaaatgcaaactcagcctccttgttaactttctggctcattggtttagctttgacaaagagtgtgcataagtcatgactagagtga |
34294170 |
T |
|
| Q |
108 |
ttgtatatgtcataacacagataaactatataatataggaactgaaaataagcttttaattttggtttgcactttttagtcctaattatcgtgattctgc |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34294169 |
ttgtatatgtcataacacagattaactatataatataggaactgaaaataagcttttaattttggtttgcactttttagtcctagttatcgtgattctgc |
34294070 |
T |
|
| Q |
208 |
gattttgtccttcagnnnnnnnnnnnnnnngaccccttttgtggtttctcctttgtaattcggtcggtagtctcccataannnnnnnnctcaaatttatg |
307 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34294069 |
gattttgtccttcagttttttagcttttttgaccccttttgtggtttctcctttgtaattcggtcggtagtctcccataattttttttctcaaatttatg |
34293970 |
T |
|
| Q |
308 |
cttaggtgacattatttattgacttgacactgaagttcaatattcagcatggttttctnnnnnnnnnnnnntttgtaacaagtcgtctagctatgaaact |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
34293969 |
cttaggtgacattatttattgacttgacactgaagttcaatattcagcatggttttctaaaaattaaaaaatttgtaacaagtcgtctagctaagaaact |
34293870 |
T |
|
| Q |
408 |
tttgaccacaatcatgatatttagagtcaaaagtacattgaagcctttaatttttcacctgtagtcattatagctgatctgattgcagcaggggtccaat |
507 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293869 |
tttgaccacaatcacgatatttagagtcaaaagtacattgaagcctttaatttttcacctgtagtcattatagctgatctgattgcagcaggggtccaat |
34293770 |
T |
|
| Q |
508 |
ttgggtgaaatgacttcacatatgctgctattccagaaatgtgagggcatgccatggaagtgccagacattagtgtaaatactgaaaattgagtgtcccc |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293769 |
ttgggtgaaatgacttcacatatgctgctattccagaaatgtgagggcatgccatggaagtgccagacattagtgtaaatactgaaaattgagtgtcccc |
34293670 |
T |
|
| Q |
608 |
ttctatactagtaattgagtgcctgagtgtaaatgatgccaagatgctaatgccaggagctgttacatcaggctgcatccaagagattattcaacagtgt |
707 |
Q |
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| T |
34293669 |
ttctatactagtaattgagtgcctaagtgtaaatgatgccaagatgctaatgccaggagctgttacatcaggctgcatccaagagattattcaacagtgt |
34293570 |
T |
|
| Q |
708 |
agaggctaaaaatagtccactaatgttacaaatgcaatgaatttcactcnnnnnnnttacttgtattattaacaaataaatggttgagtggagaaaaaat |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293569 |
agaggctaaaaatagtccactaatgttacaaatgcaatgaatttcactcaaagaaattacttgtattattaacaaataaatggttgagtggagaaaaaat |
34293470 |
T |
|
| Q |
808 |
agcaactattggtaccttgagaacatgttgagatcctgaatttggacccctagatgaaaaagaagcaacaaatggagctggtattttcacttcatggctc |
907 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293469 |
agcaactattggtaccttgagaacatgttgagatcctgaatttggacccctagatgaaaaagaagcaacaaatggagctggtattttcacttcatggctc |
34293370 |
T |
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| Q |
908 |
ttatgtatcactgctgatggtgatctttgttgaaccaagaaatttattatgtaaatcta |
966 |
Q |
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| T |
34293369 |
ttatgtatcactgctgatggtgatctttgttgaaccaagaaatttattatgtaaatcta |
34293311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 452 - 703
Target Start/End: Original strand, 12726428 - 12726679
Alignment:
| Q |
452 |
ctttaatttttcacctgtagtcattatagctgatctgattgcagcaggggtccaatttgggtgaaatgacttcacatatgctgctattccagaaatgtga |
551 |
Q |
| |
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||||||||| |||||||| || ||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
12726428 |
ctttaatttatcacctgtggtaattattgctgatctgattgcggcaggagtccaatctgggtgaaatgacttcacatatgctgctactccagaaacatga |
12726527 |
T |
|
| Q |
552 |
gggcatgccatggaagtgccagacattagtgtaaatactgaaaattgagtgtccccttctatactagtaattgagtgcctgagtgtaaatgatgccaaga |
651 |
Q |
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| T |
12726528 |
gggcatgacattgatgtaccggacatcagtgtaaattctgaaaattgagtgtcgccttctaaaccactaattgatgtcttaagtgtatatgcagccaaga |
12726627 |
T |
|
| Q |
652 |
tgctaatgccaggagctgttacatcaggctgcatccaagagattattcaaca |
703 |
Q |
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|| |||||||||||||||||| ||||||||||| ||||| |||||| |||| |
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| T |
12726628 |
tgttaatgccaggagctgttatgtcaggctgcatacaagatattattgaaca |
12726679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 820 - 954
Target Start/End: Original strand, 12726766 - 12726899
Alignment:
| Q |
820 |
taccttgagaacatgttgagatcctgaatttggacccctagatgaaaaagaagcaacaaatggagctggtattttcacttcatggctcttatgtatcact |
919 |
Q |
| |
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||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12726766 |
taccttgagaatacgctgagatcctggatttggacccctagatgaaaaagaagcaacaaatggagctggtattttcacttcctggctcttatgtatcact |
12726865 |
T |
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| Q |
920 |
gctgatggtgatctttgttgaaccaagaaatttat |
954 |
Q |
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| T |
12726866 |
gctgagggtgatctatgttgaa-caagaaatttat |
12726899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 12726170 - 12726233
Alignment:
| Q |
8 |
aactagaccggcaccaaatgcaaactcagcctccttgttaactttctggctcattggtttagct |
71 |
Q |
| |
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|||| |||| ||||||||||| ||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
12726170 |
aacttgaccagcaccaaatgcgaactcggcctccctgttaactttctggctcataggtttagct |
12726233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 483 - 686
Target Start/End: Complemental strand, 28521556 - 28521353
Alignment:
| Q |
483 |
gatctgattgcagcaggggtccaatttgggtgaaatgacttcacatatgctgctattccagaaatgtgagggcatgccatggaagtgccagacattagtg |
582 |
Q |
| |
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||||||||||||||||| ||||| || || ||||||||||||||||||||||||| |||| | ||||| |||||||||||||| || || |||| || |
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| T |
28521556 |
gatctgattgcagcaggagtccatttgggatgaaatgacttcacatatgctgctacaccagcgacatgaggacatgccatggaagttccggatattattg |
28521457 |
T |
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| Q |
583 |
taaatactgaaaattgagtgtccccttctatactagtaattgagtgcctgagtgtaaatgatgccaagatgctaatgccaggagctgttacatcaggctg |
682 |
Q |
| |
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|||| |||||||||| || |||||| | | || ||| | ||| | ||| || ||| | |||||||||||| |||||| ||||||| | |||||||| |
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| T |
28521456 |
aaaattctgaaaattgtgtatcccctgccaaaccagtgagtgatttcctaagagtataagatgccaagatgtcaatgcctggagctgcaatgtcaggctg |
28521357 |
T |
|
| Q |
683 |
catc |
686 |
Q |
| |
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|||| |
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| T |
28521356 |
catc |
28521353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 820 - 951
Target Start/End: Complemental strand, 28521285 - 28521155
Alignment:
| Q |
820 |
taccttgagaacatgttgagatcctgaatttggacccctagatgaaaaagaagcaacaaatggagctggtattttcacttcatggctcttatgtatcact |
919 |
Q |
| |
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||||||||||| ||||| ||||||| |||||| || |||||||| || | |||| |||||||||| | | ||| ||||||||||||| | ||||||| |
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| T |
28521285 |
taccttgagaagatgtttggatcctggatttggtcctctagatgagaatgtagcagtaaatggagctagcactttttcttcatggctcttgtatatcact |
28521186 |
T |
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| Q |
920 |
gctgatggtgatctttgttgaaccaagaaatt |
951 |
Q |
| |
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||||||||||| ||| |||||| ||||||||| |
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| T |
28521185 |
gctgatggtgaccttggttgaa-caagaaatt |
28521155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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