View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5043-Insertion-4 (Length: 916)
Name: NF5043-Insertion-4
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5043-Insertion-4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 864; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 864; E-Value: 0
Query Start/End: Original strand, 8 - 916
Target Start/End: Original strand, 43665762 - 43666666
Alignment:
| Q |
8 |
tatggttgatctggaagatgactcagtctaaactagaactacttaaaagacattctacaaactctaaaggaaagtgctaatttcagcttcaaagaagaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43665762 |
tatggttgatctggaagatgactcagtctaaactagaactacttaaaagacattctacaaactctaaagtaaagtgctaatttcagcttcaaagaagaaa |
43665861 |
T |
|
| Q |
108 |
gcagtgctgattaaattaattagctaacctccctataattacgcaccaaaccttcaggttccagtggtgctatagttacaattgtttcgggcaccggaaa |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665862 |
gcagtgctgattaaatt----agctaacctccctataattacgcaccaaaccttcaggttccagtggtgctatagttacaattgtttcgggcaccggaaa |
43665957 |
T |
|
| Q |
208 |
caacataggttgtggttgggatgaactaccttgtgacccaacaattttgttacaagtttcaataaggcactgtctacatttcggacaagacgaatgcgaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665958 |
caacataggttgtggttgggatgaactaccttgtgacccaacaattttgttacaagtttcaataaggcactgtctacatttcggacaagacgaatgcgaa |
43666057 |
T |
|
| Q |
308 |
cttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43666058 |
cttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacac |
43666157 |
T |
|
| Q |
408 |
actccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattccagtgtttgccgctcgaac |
507 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43666158 |
actccgagtccaaactcggcaatttcagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattccagtgtttgccgctcgaac |
43666257 |
T |
|
| Q |
508 |
tggaatgttgttagcggagcgatcaccactcatcacaactaaattggaacattttaatgcacaccttatgattgagttcaaacaaagtgaacaaataaga |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43666258 |
tggaatgttgttagcggagcgatcaccactcatcacaactaaattggaacattttaatgcacaccttatgattgagttcaaacaaagtgaacaaataaga |
43666357 |
T |
|
| Q |
608 |
gcacataataggacagagagtaccataacaacatttgcatcaaaattaccatctccagcatatgataattctttagttgaatcatggatgcttgtggaaa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43666358 |
gcacataataggacagagagtaccataacaacatttgcatcaaaattaccatctccagcatatgatgattctttagttgaatcatggatgcttgtggaaa |
43666457 |
T |
|
| Q |
708 |
ttggagggttggctgaattggatgagtgaaggagtaaccttcttgagtggaaattctcaacaagttcatggaggagtggtgaaacaaaggaagcagtagc |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43666458 |
ttggagggttggctgaattggatgagtgaaggagtaaccttcttgagtggaaattctcaacaagttcatggaggagtggtgaaacaaaggaagtagtagc |
43666557 |
T |
|
| Q |
808 |
atacatgtttttgtttagggtgttaatgtgtttgagcttaattttgatttttgaggttggttgcactaaggggatttgtatatttataaggtggttggat |
907 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43666558 |
atacatgtttttgtttaaggtgttaatgtttttgagcttaattttgatttttgaggttggttgcactaaggggatttgtatatttataaggtggttggat |
43666657 |
T |
|
| Q |
908 |
ttgttgtct |
916 |
Q |
| |
|
||||||||| |
|
|
| T |
43666658 |
ttgttgtct |
43666666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 309 - 489
Target Start/End: Original strand, 38840846 - 38841026
Alignment:
| Q |
309 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||| || || || || |||||||| || |||||||||| ||| |
|
|
| T |
38840846 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcataca |
38840945 |
T |
|
| Q |
409 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
489 |
Q |
| |
|
|| | ||||||||| || | ||| | ||| |||||| || ||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
38840946 |
ttctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaatgccttaagagctttcttcttgattcc |
38841026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 309 - 489
Target Start/End: Original strand, 38858584 - 38858764
Alignment:
| Q |
309 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||| || || || || |||||||| || |||||||||| ||| |
|
|
| T |
38858584 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcataca |
38858683 |
T |
|
| Q |
409 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
489 |
Q |
| |
|
|| | ||||||||| || | ||| | ||| |||||| || ||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
38858684 |
ttctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaatgccttaagagctttcttcttgattcc |
38858764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 309 - 489
Target Start/End: Original strand, 38864913 - 38865093
Alignment:
| Q |
309 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
408 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || || ||||||| |||||| || || || || || ||||| || |||||||| | ||| |
|
|
| T |
38864913 |
ttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataataca |
38865012 |
T |
|
| Q |
409 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
489 |
Q |
| |
|
||| | |||||||| || | ||| | |||| |||| || || ||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
38865013 |
ctctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcc |
38865093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 309 - 489
Target Start/End: Original strand, 38827058 - 38827238
Alignment:
| Q |
309 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
408 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| || || || ||||||| |||||| || || || || ||||| || || |||||||||||||| |
|
|
| T |
38827058 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacaca |
38827157 |
T |
|
| Q |
409 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
489 |
Q |
| |
|
||| | |||||| | || | ||||| |||| ||| ||||| ||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
38827158 |
ctctgtatccaaagttggtagttttaactcagttgaataacttactgttggaaatgtcttgagagctttcttcttgattcc |
38827238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 309 - 489
Target Start/End: Original strand, 38846666 - 38846846
Alignment:
| Q |
309 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
408 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| || || || ||||||| |||||| || || || || ||||| || || |||||||||||||| |
|
|
| T |
38846666 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacaca |
38846765 |
T |
|
| Q |
409 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
489 |
Q |
| |
|
||| | |||||| | || | ||| | |||| ||| ||||| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
38846766 |
ctctgtatccaaagttggtagtttcaactcagttgaataacttactgttgggaatgtcttgagagctttcttcttgattcc |
38846846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 38851058 - 38850963
Alignment:
| Q |
309 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatca |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||| ||| || || || |||||||| || |||||||||| |
|
|
| T |
38851058 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatca |
38850963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 38861458 - 38861553
Alignment:
| Q |
309 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatca |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||| ||| || || || |||||||| || |||||||||| |
|
|
| T |
38861458 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatca |
38861553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 651
Target Start/End: Original strand, 38827324 - 38827406
Alignment:
| Q |
569 |
caccttatgattgagttcaaacaaagtgaacaaataagagcacataataggacagagagtaccataacaacatttgcatcaaa |
651 |
Q |
| |
|
||||||||||| ||||| || |||||| |||||||||||||| ||||| || | |||| ||| ||||||||||||||||| |
|
|
| T |
38827324 |
caccttatgatcgagtttaaggcaagtgagcaaataagagcacacaatagaactgcaagtatcatcacaacatttgcatcaaa |
38827406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 561 - 651
Target Start/End: Complemental strand, 38850827 - 38850737
Alignment:
| Q |
561 |
ttaatgcacaccttatgattgagttcaaacaaagtgaacaaataagagcacataataggacagagagtaccataacaacatttgcatcaaa |
651 |
Q |
| |
|
|||| |||||||||||||| ||||| || |||||| ||||||| ||||||||||||||| | | || ||| |||||||||| |||||| |
|
|
| T |
38850827 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaa |
38850737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University