View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5043-Insertion-5 (Length: 427)
Name: NF5043-Insertion-5
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5043-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 240 - 421
Target Start/End: Original strand, 53941138 - 53941319
Alignment:
| Q |
240 |
catgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatggtatgacatttagtttgctcatggcaagtcttgttttgatggaaatg |
339 |
Q |
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| T |
53941138 |
catgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatgctatgacatttagtttgctcatggcaagtcttgttttgatggaaatg |
53941237 |
T |
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| Q |
340 |
cctgcaaaggatattgttcgtgaggtttggactgtagtggatgactacaaattaatgttgaacatatgtaatatataatttt |
421 |
Q |
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| T |
53941238 |
cctgcgaaggatattgttcgtgaggtttggactgtagtggatgactacaaattaatgttgaacatatgtaatatataatttt |
53941319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 53940765 - 53940962
Alignment:
| Q |
27 |
taatgatgtctcggtaagaattaaattaactcgaaaggtttgctctaactcgaaaggatgattgattatttttgttcatgttgtgggaatgcttatgaag |
126 |
Q |
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| T |
53940765 |
taatgatgtctcggtaagaattaaattaactcgaaaggtttgctctaactcgaaaggatgattgattatttttgttcatgttgtgggaatgcttatgaag |
53940864 |
T |
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| Q |
127 |
atttggatcatgttttcaaagattgcacttggacnnnnnnnnggtgtagcttcactctcatttgggtattcggtttgaggatccttcccttctttttt |
224 |
Q |
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| T |
53940865 |
atttggatcatgttttcaaagattgcacttggacaaaaaaaaggtgtagcgtccctctcatttgggtattcggtttgaggatccttcccttctttttt |
53940962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 24200145 - 24200031
Alignment:
| Q |
177 |
ttcactctcatttgggtattcggtttgaggatccttcccttcttttttataccttggcttgaacatgtcatatcttaatcatccttagatatcatctcgt |
276 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||| ||| ||| ||| |||| |||||||||| ||| ||||| |||||| ||||||| | |
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| T |
24200145 |
ttcactcttctttgggggttcgatttgaggatccttcccttcctttc-atatcttagcttaaacatgtcatttctcgttcatcattagatgtcatctcat |
24200047 |
T |
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| Q |
277 |
atgttctttctttatg |
292 |
Q |
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|||||||||||||||| |
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| T |
24200046 |
atgttctttctttatg |
24200031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 403
Target Start/End: Original strand, 55445621 - 55445851
Alignment:
| Q |
177 |
ttcactctcatttgggtattcggtttgaggatccttcccttcttttttataccttggcttgaacatgtcatatcttaatcatccttagatatcatctcgt |
276 |
Q |
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| T |
55445621 |
ttcactcttctttgggtgttcgattagaggattctcccct-ctcttttatatcttggctcgatcatgtcagttctcattcaacattagatgtcatctcat |
55445719 |
T |
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| Q |
277 |
atgttctttctttatggtatgacatttagtttgctcatggcaagtcttgttttgatgg-----aaatgcctgcaaaggatattgttcgtgaggtttggac |
371 |
Q |
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||||| |||||||||| |||| ||| |||||||| | || || ||||||||||| |||| | ||| |||||||||||||| ||| |||||| |
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| T |
55445720 |
atgttgtttctttatgttatggtattaggtttgctcgtaataaatcatgttttgatgggaaacaaattcttgcggaggatattgttcgtaaggcttggac |
55445819 |
T |
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| Q |
372 |
tgtagtggatgactacaaattaatgttgaaca |
403 |
Q |
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|| ||| |||||||| || ||||||||||||| |
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| T |
55445820 |
tgcagtagatgactataatttaatgttgaaca |
55445851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 21112728 - 21112828
Alignment:
| Q |
229 |
cttggcttgaacatgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatggtatgacatttagtttgctcatggcaagtcttgttt |
328 |
Q |
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|||| |||||| | ||||| ||| | ||||| ||||||||||||| ||| ||||||||||||| |||| |||| |||||||||| ||||||||||| |
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| T |
21112728 |
cttgacttgaataggtcatttctcattcatcattagatatcatctgatatattctttctttatgttatggtatttggtttgctcataataagtcttgttt |
21112827 |
T |
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| Q |
329 |
t |
329 |
Q |
| |
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| |
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| T |
21112828 |
t |
21112828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 312
Target Start/End: Original strand, 5554230 - 5554361
Alignment:
| Q |
180 |
actctcatttgggtattcggtttgaggatccttcccttcttttttataccttggcttgaacatgtcatatcttaatcatccttagatatcatctcgtatg |
279 |
Q |
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|||||| ||| ||| |||| || |||||| ||||||| || ||| ||| |||||||||||||||| || | | | ||||| |||||| || |||| |||| |
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| T |
5554230 |
actctcctttaggtgttcgattagaggattcttccct-ctctttcatatcttggcttgaacatgttatttgtcattcatcattagatgtcgtctcatatg |
5554328 |
T |
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| Q |
280 |
ttctttctttatggtatgacatttagtttgctc |
312 |
Q |
| |
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||||||||||||| |||| |||| |||||||| |
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| T |
5554329 |
ttctttctttatgttatggtatttggtttgctc |
5554361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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