View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5043-Insertion-7 (Length: 341)
Name: NF5043-Insertion-7
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5043-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 51115285 - 51115438
Alignment:
| Q |
8 |
taatcattaaacaatctgttattgtgtgcattttggtttagccttgggtaaattggagagtagtctaattagaattaaagaacaactattgggaaattga |
107 |
Q |
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| T |
51115285 |
taatcattaaacaatctgttattgtgtgcattttggtttagccttgggtaaattggagagtagtctaattagaattaaagaacaactattgggaaattga |
51115384 |
T |
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| Q |
108 |
ccgagactaacttacttatcaaccaactattcttaataagaaaaattagagaat |
161 |
Q |
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| T |
51115385 |
ccgagactaacttacttatcaaccaactattcttaataagaaaaattagagaat |
51115438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 211 - 341
Target Start/End: Original strand, 51115435 - 51115565
Alignment:
| Q |
211 |
gaatcaacagaaagaaagagtatataatgaacaagtcaaggaaggaagaaaattctgccttcctcaatcctctctagaaatccataacctaagtaagtcc |
310 |
Q |
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| T |
51115435 |
gaatcaacagaaagaaagagtatataacgaacaagtcaaggaaggaagaaaattctgccttcctcaatcctctctagaaatccataacctaagtaagtcc |
51115534 |
T |
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| Q |
311 |
ccctcccctttactgtctttgcatgtgtgta |
341 |
Q |
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| T |
51115535 |
ccctcccctttactgtctttgcatgtgtgta |
51115565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 640136 - 640083
Alignment:
| Q |
257 |
agaaaattctgccttcctcaatcctctctagaaatccataacctaagtaagtcc |
310 |
Q |
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| T |
640136 |
agaaaattctgtcttcctcaatcccctcgagaaatctataaccaaaggaagtcc |
640083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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