View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5043-Insertion-8 (Length: 234)
Name: NF5043-Insertion-8
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5043-Insertion-8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 6492370 - 6492596
Alignment:
| Q |
8 |
ataagaacaattttatatcgagtgttgacaaattacggaccgggaaacatgctttattctannnnnnnnnagggaaagggaaacatgctttatagaattc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6492370 |
ataagaacaattttatatcgagtgttgacaaattacggactgggaaacatgctttattctatttttttttagggaaagggaaacatgctttatagaattc |
6492469 |
T |
|
| Q |
108 |
aaattactcataattcatatatcatgttaatcatcattattcaccaaatactccaatatttgtaattataatgtccagaaaagaggcagtaaatcaagac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6492470 |
aaattactcataattcatatatcatgttaatcatcattattcaccaaatactccaatatttgtaattataatgtccagaaaagaggcagtaaatcaagac |
6492569 |
T |
|
| Q |
208 |
gagtataattctctaatatttctatgt |
234 |
Q |
| |
|
||||||||||||||| |||||| |||| |
|
|
| T |
6492570 |
gagtataattctctactatttccatgt |
6492596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University