View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5043_high_1 (Length: 310)
Name: NF5043_high_1
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5043_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 49872247 - 49871941
Alignment:
| Q |
1 |
gttggtgtaaatgacggcagccaagttgaatcggaaggtgataaccaaattgcaaaatcacnnnnnnncgttcaagtgctttgtggaacaacagagtaca |
100 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
49872247 |
gttggtgtaaatgacgccggccaagttgaatcggaaggtgataaccaaattacaaaatcacaaaaaaacgttaaagtgctttgtggaacaacagagtaca |
49872148 |
T |
|
| Q |
101 |
aacaaacatgtgaaaagagtcttgcaaaaacaggcaacaaagacatgaaggaattgatcaaacaagcattcaatgcaacagctgaagaactctcgaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49872147 |
aacaaacatgtgaaaagagtcttgcaaaaacaggaaacaaagacatgaaggaattgatcaaacaagcattcaatgcaacagctgaagaactcgtgaaaca |
49872048 |
T |
|
| Q |
201 |
aatccacaactcaacactctacaaggaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgat |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49872047 |
aatacacaactcaacactctacaaggaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgat |
49871948 |
T |
|
| Q |
301 |
gtccatc |
307 |
Q |
| |
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|| |||| |
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| T |
49871947 |
gttcatc |
49871941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 49866316 - 49866010
Alignment:
| Q |
1 |
gttggtgtaaatgacggcagccaagttgaatcggaaggtgataaccaaattgcaaaatcacnnnnnnncgttcaagtgctttgtggaacaacagagtaca |
100 |
Q |
| |
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||||||||||| || ||| ||||||||||||||||||| | ||||||||||| |||||||| ||||||||| |||||||||||||||| ||||| |
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| T |
49866316 |
gttggtgtaaaagatggcggccaagttgaatcggaaggcggtaaccaaattgtaaaatcacaaaaaatcgttcaagtactttgtggaacaacagggtaca |
49866217 |
T |
|
| Q |
101 |
aacaaacatgtgaaaagagtcttgcaaaaacaggcaacaaagacatgaaggaattgatcaaacaagcattcaatgcaacagctgaagaactctcgaaaca |
200 |
Q |
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|||||||||| ||||||||||||||||||||||| || | |||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |
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| T |
49866216 |
aacaaacatgcgaaaagagtcttgcaaaaacaggaaaaacagacatgaaggaattgatcaaagcagtattcaaagcaacagctgaagaactctcgaaaca |
49866117 |
T |
|
| Q |
201 |
aatccacaactcaacactctacaaggaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgat |
300 |
Q |
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|||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49866116 |
aatccataactcaaaactctacaaggaattagctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgat |
49866017 |
T |
|
| Q |
301 |
gtccatc |
307 |
Q |
| |
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|| |||| |
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|
| T |
49866016 |
gttcatc |
49866010 |
T |
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