View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5043_high_2 (Length: 300)

Name: NF5043_high_2
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5043_high_2
NF5043_high_2
[»] chr3 (1 HSPs)
chr3 (1-287)||(51114439-51114736)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 51114736 - 51114439
Alignment:
Q  1 ttaagaagaagtcaaactaacacaccaaaattggcact-aagaggatcaaaccagagacttgagaagaacacactccgatgtcacattttaatgtaggtt 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51114736 ttaagaagaagtcaaactaacacaccaaaattggcactgaagaggatcaaactagagacttgagaagaacacactccgatgtcacattttaatgtaggtt 51114637  T
Q  100 tcattttgttttgtaccttatttgccgtgtgaaatgaact----------acatttcaagcatgcattctatctaacttctaatccaacacataaataag 189  Q
    ||||||||||||||| ||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51114636 tcattttgttttgtatcttatttgccgtgtgaaatgaactacagacatacacatttcaagcatgcattctatctaacttctaatccaacaaataaataag 51114537  T
Q  190 gttcaaacaccaatggacatgaataattagcagaatattttctcagatatctnnnnnnngaaagagataatcaagaattaaatttgtactagaataat 287  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  51114536 gttcaaacaccaatggacatgaataatttgcagaatattttctcagatatctaaaaaaagaaagagataatcaagaattaaatttgtactagaataat 51114439  T

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