View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5043_high_3 (Length: 248)

Name: NF5043_high_3
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5043_high_3
NF5043_high_3
[»] chr1 (3 HSPs)
chr1 (5-145)||(51276504-51276643)
chr1 (51-147)||(7102404-7102500)
chr1 (56-145)||(52113335-52113424)
[»] chr4 (2 HSPs)
chr4 (5-147)||(44229823-44229964)
chr4 (49-128)||(26348869-26348948)
[»] chr3 (4 HSPs)
chr3 (5-147)||(12408487-12408628)
chr3 (167-248)||(8230678-8230759)
chr3 (55-147)||(47692453-47692545)
chr3 (72-147)||(20809289-20809364)
[»] chr7 (1 HSPs)
chr7 (56-145)||(15074407-15074496)
[»] chr6 (1 HSPs)
chr6 (5-145)||(10519543-10519682)
[»] chr5 (2 HSPs)
chr5 (56-139)||(38495313-38495396)
chr5 (72-148)||(10513179-10513255)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 51276504 - 51276643
Alignment:
Q  5 agagaagaaggagaaagacaaagaaaaatgggaagaatgaagtcgaattatcaaattaaccctatacttcacaccaaaattaccgttttatccacagtgt 104  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  51276504 agagaagaaggggaaagacaaagaaaa-tgggaagaatgaagtcgaattaccaaattaaccctatacttcacatcaaaattaccgttttgcccatagtgt 51276602  T
Q  105 tgtatttgtgtcacaaattgtgtgcccatttatcatttctc 145  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  51276603 tgtatttgtgtcacaaattgtgtgtccatttatcatttctc 51276643  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 7102500 - 7102404
Alignment:
Q  51 attatcaaattaaccctatacttcacaccaaaattaccgttttatccacagtgttgtatttgtgtcacaaattgtgtgcccatttatcatttctctt 147  Q
    |||| ||||||| |||| || |||||||||||||||| ||||||||||  ||||||| |||| |||||||||| |||| | | |||||||| |||||    
T  7102500 attaccaaattatccctgtatttcacaccaaaattactgttttatccatggtgttgtttttgcgtcacaaattatgtgtctacttatcattactctt 7102404  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 52113424 - 52113335
Alignment:
Q  56 caaattaaccctatacttcacaccaaaattaccgttttatccacagtgttgtatttgtgtcacaaattgtgtgcccatttatcatttctc 145  Q
    ||||||| |||| || ||||||| |||||||| |||||| |||  ||||||||| ||||||  |||||||||| | ||||||||||||||    
T  52113424 caaattacccctctagttcacactaaaattactgttttacccatggtgttgtatatgtgtctaaaattgtgtgtctatttatcatttctc 52113335  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 44229823 - 44229964
Alignment:
Q  5 agagaagaaggagaaagacaaagaaaaatgggaagaatgaagtcgaattatcaaattaaccctatacttcacaccaaaattaccgttttatccacagtgt 104  Q
    |||||| ||||||||||||| |||||| ||||||||||||||| |||||| |  |||||||||||  |||||||||||||||| |||||  |||  ||||    
T  44229823 agagaataaggagaaagacagagaaaa-tgggaagaatgaagtggaattaccccattaaccctatggttcacaccaaaattactgttttgcccatggtgt 44229921  T
Q  105 tgtatttgtgtcacaaattgtgtgcccatttatcatttctctt 147  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  44229922 tgtatttgtgtctcaaattgtgtgtccatttatcatttctctt 44229964  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 26348869 - 26348948
Alignment:
Q  49 gaattatcaaattaaccctatacttcacaccaaaattaccgttttatccacagtgttgtatttgtgtcacaaattgtgtg 128  Q
    |||||||||||||| || | || |||||||||||||||| |||||| |||  ||||||||||||||||  ||||||||||    
T  26348869 gaattatcaaattacccttctagttcacaccaaaattactgttttacccatggtgttgtatttgtgtctaaaattgtgtg 26348948  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 12408628 - 12408487
Alignment:
Q  5 agagaagaaggagaaagacaaagaaaaatgggaagaatgaagtcgaattatcaaattaaccctatacttcacaccaaaattaccgttttatccacagtgt 104  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||   |||||| |||||  |||||||||||||||| |||||  |||   |||    
T  12408628 agagaagaaggagaaagacaaagaaaa-tgggaagaatgaagtggaattactcaattaatcctatggttcacaccaaaattactgttttgcccatgatgt 12408530  T
Q  105 tgtatttgtgtcacaaattgtgtgcccatttatcatttctctt 147  Q
    |||||||||||  ||||||||||| ||||||||||||||||||    
T  12408529 tgtatttgtgtttcaaattgtgtgtccatttatcatttctctt 12408487  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 8230678 - 8230759
Alignment:
Q  167 tacctaatactagtaggtagtacatgatacatgtagttcaccattttaggacgacccatgtttcccaactagtgctataccc 248  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||||||  | || |||||||| |||||| ||||| ||||    
T  8230678 taccaaatactaataggtagtacatgatacatgtagttcaccgttttagacccactcatgtttcacaactaatgctacaccc 8230759  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 47692545 - 47692453
Alignment:
Q  55 tcaaattaaccctatacttcacaccaaaattaccgttttatccacagtgttgtatttgtgtcacaaattgtgtgcccatttatcatttctctt 147  Q
    |||||||| |||| || |||||||||||||||| |||||| |||  ||||||| ||||||||||||||| |||| | | |||||||| |||||    
T  47692545 tcaaattatccctgtatttcacaccaaaattactgttttacccatggtgttgtttttgtgtcacaaattatgtgtctacttatcattactctt 47692453  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 20809289 - 20809364
Alignment:
Q  72 ttcacaccaaaattaccgttttatccacagtgttgtatttgtgtcacaaattgtgtgcccatttatcatttctctt 147  Q
    |||||||||||||||  ||||| ||||  ||||||||||||||||  |||||||||| | | ||||||||||||||    
T  20809289 ttcacaccaaaattattgttttgtccatggtgttgtatttgtgtccaaaattgtgtgtctacttatcatttctctt 20809364  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 15074407 - 15074496
Alignment:
Q  56 caaattaaccctatacttcacaccaaaattaccgttttatccacagtgttgtatttgtgtcacaaattgtgtgcccatttatcatttctc 145  Q
    ||||||| |||| || |||||||||||||||| |||||  |||  ||||||||| ||||||  |||||||||| | ||||||||||||||    
T  15074407 caaattacccctctagttcacaccaaaattactgttttgcccatggtgttgtatatgtgtctaaaattgtgtgtctatttatcatttctc 15074496  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 10519682 - 10519543
Alignment:
Q  5 agagaagaaggagaaagacaaagaaaaatgggaagaatgaagtcgaattatcaaattaaccctatacttcacaccaaaattaccgttttatccacagtgt 104  Q
    ||||||||| ||||||| |||||||||  |||||||| | | | ||| || ||||||| |||| || ||||||||||||| || |||||  |||  ||||    
T  10519682 agagaagaaagagaaaggcaaagaaaag-gggaagaagggaatggaactaccaaattacccctctagttcacaccaaaatgactgttttgcccatggtgt 10519584  T
Q  105 tgtatttgtgtcacaaattgtgtgcccatttatcatttctc 145  Q
    ||||||||||||  ||||| |||| | | ||||||||||||    
T  10519583 tgtatttgtgtccaaaattatgtgtctaattatcatttctc 10519543  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 38495396 - 38495313
Alignment:
Q  56 caaattaaccctatacttcacaccaaaattaccgttttatccacagtgttgtatttgtgtcacaaattgtgtgcccatttatca 139  Q
    ||||||| |||| || |||||||||||||||| |||||  |||  ||||||||| ||||||  |||||||||| | ||||||||    
T  38495396 caaattacccctctagttcacaccaaaattactgttttgcccatggtgttgtatatgtgtctaaaattgtgtgtctatttatca 38495313  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 10513179 - 10513255
Alignment:
Q  72 ttcacaccaaaattaccgttttatccacagtgttgtatttgtgtcacaaattgtgtgcccatttatcatttctctta 148  Q
    |||||||||||||||  |||||  |||  ||||||||||||||||  |||| ||||| | | |||||||||||||||    
T  10513179 ttcacaccaaaattattgttttgcccatggtgttgtatttgtgtccaaaatagtgtgtctacttatcatttctctta 10513255  T

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