View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5043_high_4 (Length: 247)
Name: NF5043_high_4
Description: NF5043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5043_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 51115289 - 51115063
Alignment:
| Q |
18 |
gattaaacaaatacctagcataatttacataaatactaaggaggtgaggtgaaagtgtcgcaaaaaatagcatacatgagagacttgtgtattcaataat |
117 |
Q |
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| T |
51115289 |
gattaaacaaatacctagcataatttacataaatactaaggaggtgaggtgaaagtgtcgcaaaaaatagcatacatgagagacttgt--attcaataat |
51115192 |
T |
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| Q |
118 |
caagtcaccacaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaacaacaaaatatacaccaaaatcttcctgagtcatagttt |
217 |
Q |
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| T |
51115191 |
caagtcac-acaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaacaacaaaatgtacacctaaatcttcctgagtcatagttt |
51115093 |
T |
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| Q |
218 |
tgtaagccatccattgtatttgaaatattg |
247 |
Q |
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| T |
51115092 |
tgtaagccatccattgtatttgaaatattg |
51115063 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 29020664 - 29020718
Alignment:
| Q |
173 |
tagaaacaacaaaatatacaccaaaatcttcctgagtcatagttttgtaagccat |
227 |
Q |
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| T |
29020664 |
tagagacaacacaaaatacaccaaaatcttcctgagtcatagttctgtaaaccat |
29020718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 1119198 - 1119144
Alignment:
| Q |
190 |
acaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaata |
244 |
Q |
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| T |
1119198 |
acaccaaaatcttcctgagtcgtagttttgtaagccgtacattgtaactgaaata |
1119144 |
T |
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