View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5044-Insertion-1 (Length: 1110)
Name: NF5044-Insertion-1
Description: NF5044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5044-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 4 - 942
Target Start/End: Original strand, 52039262 - 52040190
Alignment:
| Q |
4 |
aacatgtacagctacaaaaccatgtactcttgattccaaaagaaaaataatacacataagagcctttgttttctgtaccacctaaagtatatcagaaatt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52039262 |
aacatgtacagctacaaaaccatgtactcttgattccaaaagaaaaataatatacataagagcctttgttttctgtaccacctaaagtatatcataaatt |
52039361 |
T |
|
| Q |
104 |
ctccactataacaaataaactaaccaaatgcagtaaatacaaatctgaacatataatagcttcnnnnnnnnnnnngattaattagttatataaacatgat |
203 |
Q |
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| T |
52039362 |
ctccactataacaaattaactaaccaaatgcagtaaatacaaatctgaacatgtaatagcttcaaaaataaaaaagattaattagttatataaacatgat |
52039461 |
T |
|
| Q |
204 |
agcatgaaatattgaatcatttcatgaagcacgtttattgcatcagcctgtaatgtagcttacttaatttaaatcctaaaaaatacaaattcaaaatgaa |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || | | || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52039462 |
agcatgaaatattgaatcatttcatgaagcacgtttat---ataaacatga----tagcttacttaatttaaatcctaaaaaatacaaattcaaaatgaa |
52039554 |
T |
|
| Q |
304 |
gcacaccaacaatgttaccattcacccatttatgttttaatgtgagatgtatgagatggtgaatagaaaagcaagagcaacagaatagcatgtgggaaaa |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52039555 |
gcacaccaacaatgttaccattcacccatttatgttttaacgtgagatgtatgagatggtgaatagaaaagcaagagcaacagaatagcatgtgggaaaa |
52039654 |
T |
|
| Q |
404 |
aggtctgtcaagaatcaacatatcatacttcaactgtgagatcgtataccttaaatttgtgttagaaaattaagaatattaagtataaatttaaaattta |
503 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52039655 |
aggtctgtcaagaatcaacatatcatacttcaactgtgagatcgtataccttaaacttgtgttagaaaattaagaatattaagtataaatttaaacttta |
52039754 |
T |
|
| Q |
504 |
ttccgtgaagagatcaagtgacttaacatgactatacctgcacacttaattaatagtttagaaagaaag---nnnnnnnncagagcatttgatttgaacc |
600 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52039755 |
ttcagtgaagagatcaaatgacttaacatgactatacctgcacacttaattaatagtttagaaagaaagaaaaataaaaacagagcatttgatttgaacc |
52039854 |
T |
|
| Q |
601 |
cttcaatttgatgcatttcacttgtctgcattcttttatctactcaattgtatgtaacggggttgatttgcgaatacaaaataacaatcatcaaataatg |
700 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52039855 |
cttcaatttgatgcatttcacttgtctgcattcttttatttactcaattgtatgtaacggggttgatttgcgaatacaaaataacaatcatcaaataatg |
52039954 |
T |
|
| Q |
701 |
aatatcaaaactatcttgcaaacattaatagccaacaacatgataagtttggaagaataaactttggaaataaactttatagtttgaaagtgaaacgtat |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
52039955 |
aatatcaaaactatcttgcaaacattaatagc---caacatgataagtttggaagaataaactttggaaatcaactttatagtttgaaggtgaaacgtat |
52040051 |
T |
|
| Q |
801 |
tttcctaaccatattgtttacaagccaaaacaatgtctgctgtagagcnnnnnnngccgcataagatacaccaaatggggggagaagaattaccacaata |
900 |
Q |
| |
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| T |
52040052 |
tttcctaatcgtattgtttagaagcc-aaacaatgtctattgtagagctttttttgccgcagaagatacaccaa--tggggaagaagaattaccacaata |
52040148 |
T |
|
| Q |
901 |
gctgcaatgnnnnnnngcaaatcgatgcagagtatatatata |
942 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||| |
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| T |
52040149 |
gctgcaatgaaaaaaagcaaaccgatgcagagtatatatata |
52040190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 306 - 401
Target Start/End: Original strand, 55904062 - 55904157
Alignment:
| Q |
306 |
acaccaacaatgttaccattcacccatttatgttttaatgtgagatgtatgagatggtgaatagaaaagcaagagcaacagaatagcatgtgggaa |
401 |
Q |
| |
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|||||||||||||||| || ||||||||| ||| |||||||||| |||||||||| | |||||| || |||| |||||||||| ||||||||| |
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| T |
55904062 |
acaccaacaatgttacgatgcacccatttttgtgctaatgtgagaggtatgagatgataaatagacaacagagagtaacagaatagtatgtgggaa |
55904157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 666 - 771
Target Start/End: Complemental strand, 13928451 - 13928349
Alignment:
| Q |
666 |
atttgcgaatacaaaataacaatcatcaaataatgaatatcaaaactatcttgcaaacattaatagccaacaacatgataa-gtttggaagaataaactt |
764 |
Q |
| |
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|||||| |||| ||| ||||||||| |||||| | || ||||||||||||||| |||||| | ||||||||||||||||| |||||||| ||||||| |
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| T |
13928451 |
atttgccaatagaaactaacaatcaacaaatagtaaaaatcaaaactatcttggaaacat--agagccaacaacatgataatttttggaag--taaactt |
13928356 |
T |
|
| Q |
765 |
tggaaat |
771 |
Q |
| |
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||||||| |
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| T |
13928355 |
tggaaat |
13928349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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