View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5044-Insertion-2 (Length: 1051)

Name: NF5044-Insertion-2
Description: NF5044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5044-Insertion-2
NF5044-Insertion-2
[»] chr3 (7 HSPs)
chr3 (347-1001)||(7925040-7925668)
chr3 (6-349)||(7925896-7926239)
chr3 (1001-1048)||(7924786-7924833)
chr3 (537-621)||(42110914-42110998)
chr3 (531-587)||(52110907-52110963)
chr3 (605-697)||(25123224-25123316)
chr3 (533-611)||(26665420-26665498)
[»] chr5 (9 HSPs)
chr5 (538-659)||(28503194-28503315)
chr5 (617-706)||(35323596-35323685)
chr5 (618-704)||(17223062-17223148)
chr5 (627-706)||(13271487-13271566)
chr5 (626-709)||(32177305-32177388)
chr5 (620-666)||(27549729-27549775)
chr5 (605-701)||(33043864-33043960)
chr5 (531-577)||(35631140-35631186)
chr5 (540-704)||(22023703-22023868)
[»] chr6 (14 HSPs)
chr6 (616-703)||(7591053-7591140)
chr6 (540-706)||(29389113-29389279)
chr6 (535-672)||(33240802-33240938)
chr6 (552-706)||(6541956-6542107)
chr6 (588-701)||(9540530-9540643)
chr6 (616-668)||(20207190-20207242)
chr6 (616-668)||(22101213-22101265)
chr6 (605-702)||(6978500-6978598)
chr6 (627-671)||(989515-989559)
chr6 (588-646)||(2396765-2396823)
chr6 (628-690)||(18075563-18075625)
chr6 (627-673)||(33450830-33450876)
chr6 (588-702)||(34948974-34949088)
chr6 (616-705)||(32826711-32826800)
[»] chr8 (7 HSPs)
chr8 (537-707)||(27157622-27157792)
chr8 (627-705)||(44173141-44173219)
chr8 (533-688)||(7632665-7632821)
chr8 (588-673)||(40899651-40899737)
chr8 (616-707)||(3103734-3103825)
chr8 (534-668)||(9045628-9045762)
chr8 (628-701)||(37507535-37507608)
[»] chr2 (5 HSPs)
chr2 (605-697)||(24166794-24166886)
chr2 (558-667)||(4377133-4377242)
chr2 (540-701)||(24510893-24511054)
chr2 (628-702)||(28816193-28816267)
chr2 (537-704)||(38308024-38308191)
[»] chr7 (6 HSPs)
chr7 (621-706)||(2391577-2391662)
chr7 (540-709)||(22713372-22713541)
chr7 (590-704)||(44453593-44453707)
chr7 (538-702)||(3255078-3255242)
chr7 (537-703)||(17115879-17116044)
chr7 (632-666)||(29018129-29018163)
[»] chr4 (3 HSPs)
chr4 (616-705)||(9603878-9603967)
chr4 (558-660)||(17349547-17349648)
chr4 (627-702)||(30441368-30441443)
[»] chr1 (10 HSPs)
chr1 (538-703)||(7439021-7439185)
chr1 (605-709)||(17339741-17339845)
chr1 (618-673)||(48779685-48779740)
chr1 (615-666)||(6950225-6950276)
chr1 (616-706)||(31767937-31768028)
chr1 (618-673)||(38091249-38091304)
chr1 (616-706)||(31577997-31578086)
chr1 (558-659)||(563832-563933)
chr1 (559-664)||(15322236-15322341)
chr1 (533-642)||(30527649-30527758)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 347 - 1001
Target Start/End: Complemental strand, 7925668 - 7925040
Alignment:
Q  347 tgatttttaggatcttgatatgctgtaaaacaagaatttcacatataagtaaaccatattcttatgaactacaagggttagatggctgctatgaagctca 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||    
T  7925668 tgatttttaggatcttgatatgctgtaaaacaagaatttcacatataagtaa-ccatattcctatgaactacaagggttagatggctgctataaagcaca 7925570  T
Q  447 tatacagacataacacacgatgcgaatactgatatgtctagccaatgattgggctaaattgcaaaagttgggttgacagaagagttagactgtttctttt 546  Q
    ||||| ||||||     ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||                     |    
T  7925569 tatacggacata-----cgacgcgaatactgatatgtctagccaatggttgggttaaattgcaaaagttgggttgaca---------------------t 7925496  T
Q  547 tccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatattt 646  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7925495 tccatcctataagtttctcgcgcgccctatgcggttcggaatatagaattcgaatggtataaacaccctataaaaccttaaaaaatacgttgaaatattt 7925396  T
Q  647 caaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggccaaagagtaaactataaatcatcaaattacatgaaatattt 746  Q
    || |||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7925395 cagattttagaatctaaataggacacgtgagaaattcatagggtggaaaaagtaatggccaaagagtaaaccataaatcatcaaattacatgaaatattt 7925296  T
Q  747 tacaattcatctgcggattggtagaaagaacaaacttttgttgacaaaaaatttatttatagttcatcaaattagaagaaaatccctactatacatcaac 846  Q
    ||| |||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7925295 tactattcatctgctgattataagaaagaacaaacttttgttgacaaaaaatttatttatagttcatcaaattagaagaaaatccctactatacatcaac 7925196  T
Q  847 tca-acttctattaagccatatattttgtagccaaaccttccctaatgcacattggattaggtaaggtttggtcacacttgcattttctcaagaatggcg 945  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7925195 tcatacttctattaagccatatactttgtagccaaaccttccctaatgcatattggattaggaaaagtttggtcacacttgcattttctcaagaatggcg 7925096  T
Q  946 ggataaattatgggatccatttaagaacataaatcgaattatttgtataagagtga 1001  Q
    ||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||    
T  7925095 ggataaattgtgggatccatttaaaaacataaattgaatcatttgtataagagtga 7925040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 349
Target Start/End: Complemental strand, 7926239 - 7925896
Alignment:
Q  6 cattcattaccatgatcatgatgttcaacaatcttattcgagtcggtgatagtacttgttgttggtacttggaagggatttccgagcgatgattcatttg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926239 cattcattaccatgatcatgatgttcaacaatcttattcgagtcgatgatagtacttgttgttggtacttggaagggatttccgagcgatgattcatttg 7926140  T
Q  106 tagatggttggtgcaaacttgactcaaaaggtacttgatcatgcaaatttacagattgagttgtactcacatgtttgatgttagtagtgttatcatgatc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||    
T  7926139 tagatggttggtgcaaacttgactcaaaaggtacttgatcatgcaaattttcagattgagttgtattcacatgtttgatgttagtagtggtgtcatgatc 7926040  T
Q  206 atcaagtaataagaagggattttgtgatgttgatgatgataatgaagaagtttctgagttatttggaaaagaaggatgaaaatcaccaaaagggttagca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926039 atcaagtaataagaagggattttgtgatgttgatgatgataatgaagaagtttctgagttatttggaaaagaaggatgaaaatcaccaaaagggttagca 7925940  T
Q  306 ttatttgcttccaaatgactattaacacctttttgcatcattga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7925939 ttatttgcttccaaatgactattaacacctttttgcatcattga 7925896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1001 - 1048
Target Start/End: Complemental strand, 7924833 - 7924786
Alignment:
Q  1001 aaaggtggattttttgtgattccaattataattgcaccctgcatgtgt 1048  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7924833 aaaggtggattttttgtgattccaattataattgcaccctgcatgtgt 7924786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 537 - 621
Target Start/End: Original strand, 42110914 - 42110998
Alignment:
Q  537 tgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaa 621  Q
    |||||||||||||||| ||  ||||||||||||||||||||  | ||||| ||||||||||||| |  |||||||| | ||||||    
T  42110914 tgtttctttttccatcttacgagtttctcgcgcgccctatgcaggttggattatagaattcgaacgacataaacaccccataaaa 42110998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 531 - 587
Target Start/End: Original strand, 52110907 - 52110963
Alignment:
Q  531 ttagactgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaa 587  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||  ||||||||    
T  52110907 ttagactgtttctttttccatcctatgagtttctcacacgccctatgcagtttggaa 52110963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 605 - 697
Target Start/End: Complemental strand, 25123316 - 25123224
Alignment:
Q  605 ataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaa 697  Q
    ||||| || |||||||||||  |||||  |||| ||||||||   |||||||||||||||||||||||| |  ||| ||||| ||||||||||    
T  25123316 ataaaaaccctataaaacctccaaaaacgcgttaaaatattttggattttagaatctgaatagggcgcgcgaaaaactcatatggtggaaaaa 25123224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 533 - 611
Target Start/End: Original strand, 26665420 - 26665498
Alignment:
Q  533 agactgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaaca 611  Q
    |||||| ||||||| ||| | ||| ||||||||||||||||||||  ||||| | |||||||| |||| || |||||||    
T  26665420 agactgcttcttttcccaccatatgagtttctcgcgcgccctatgcagtttgaattatagaatccgaacggcataaaca 26665498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 538 - 659
Target Start/End: Original strand, 28503194 - 28503315
Alignment:
Q  538 gtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgtt 637  Q
    ||||||||||||||||||| ||||| || |||| ||||||  ||||||| |||| |||||||| || ||||| |||| |||||| | |  ||||||||||    
T  28503194 gtttctttttccatcctatgagtttttcacgcgtcctatgcagtttggattataaaattcgaacggcataaatactccataaaaacctccaaaatacgtt 28503293  T
Q  638 gaaatatttcaaattttagaat 659  Q
    ||||||||||| ||||||||||    
T  28503294 gaaatatttcagattttagaat 28503315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 617 - 706
Target Start/End: Complemental strand, 35323685 - 35323596
Alignment:
Q  617 taaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggcc 706  Q
    ||||||||| |||||||||||||||||||||  ||||||||||||||||||| |||  | |||  ||||| ||||| |||||||||||||    
T  35323685 taaaaccttcaaaaatacgttgaaatatttcggattttagaatctgaataggacgcacgagaatctcataaggtgggaaaagtaatggcc 35323596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 618 - 704
Target Start/End: Complemental strand, 17223148 - 17223062
Alignment:
Q  618 aaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatgg 704  Q
    |||||||  ||||| |||||||||||||||| |||||||||||| |||| |||||||| |||| ||||  ||||| |||||||||||    
T  17223148 aaaacctgcaaaaacacgttgaaatatttcagattttagaatctaaataaggcgcgtgagaaactcatcaggtgggaaaagtaatgg 17223062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 627 - 706
Target Start/End: Original strand, 13271487 - 13271566
Alignment:
Q  627 aaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggcc 706  Q
    ||||| |||||||||||||||| ||||||||||   |||||| |||| | |||| | ||| |||||||||||||||||||    
T  13271487 aaaaacacgttgaaatatttcagattttagaattcaaataggacgcgcgagaaactaatatggtggaaaaagtaatggcc 13271566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 626 - 709
Target Start/End: Original strand, 32177305 - 32177388
Alignment:
Q  626 aaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggccaaa 709  Q
    |||||||||||| ||| |||||| ||||||||||  |||||||||| ||| |||| ||||||| ||  |||||||||| |||||    
T  32177305 aaaaaatacgttaaaacatttcagattttagaatacgaatagggcgtgtgagaaactcataggatgagaaaagtaatgaccaaa 32177388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 620 - 666
Target Start/End: Original strand, 27549729 - 27549775
Alignment:
Q  620 aaccttaaaaaatacgttgaaatatttcaaattttagaatctgaata 666  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  27549729 aaccttaaaaaacacgttgaaacatttcaaattttagaatctaaata 27549775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 605 - 701
Target Start/End: Complemental strand, 33043960 - 33043864
Alignment:
Q  605 ataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaa 701  Q
    |||||||||| |||||| |||  |||| ||||| |||||||||| |||||||||| | ||||||| | |   |||| ||||||| ||||||||||||    
T  33043960 ataaacactccataaaatcttttaaaacacgttaaaatatttcagattttagaatttaaatagggtgtgcaagaaactcataggatggaaaaagtaa 33043864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 577
Target Start/End: Original strand, 35631140 - 35631186
Alignment:
Q  531 ttagactgtttctttttccatcctataagtttctcgcgcgccctatg 577  Q
    |||||| ||||||||||||||||||| |||||||| ||| |||||||    
T  35631140 ttagacggtttctttttccatcctatgagtttctcacgcaccctatg 35631186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 540 - 704
Target Start/End: Original strand, 22023703 - 22023868
Alignment:
Q  540 ttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaac-cttaaaaaatacgttg 638  Q
    |||||||| |||| | | ||||||||||||||| ||||   || | | |||||||||| || || |||||||| ||||||||  ||  ||||| | ||||    
T  22023703 ttcttttttcatcatgtgagtttctcgcgcgccatatgctattcgaattatagaattccaacggcataaacaccctataaaaagctccaaaaacatgttg 22023802  T
Q  639 aaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatgg 704  Q
    ||| ||||  ||||| ||||| ||||||||| | |   |||| |||||| ||||||||||||||||    
T  22023803 aaacatttggaatttcagaatatgaatagggtgtgcaagaaactcatagagtggaaaaagtaatgg 22023868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 616 - 703
Target Start/End: Complemental strand, 7591140 - 7591053
Alignment:
Q  616 ataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatg 703  Q
    ||||||||| |||||| |||||||||||||||  |||||||||||| |||||| |||| |||||||||||||| ||| ||||||||||    
T  7591140 ataaaacctcaaaaaacacgttgaaatatttcggattttagaatcttaataggacgcgcgggaaattcataggatgggaaaagtaatg 7591053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 540 - 706
Target Start/End: Original strand, 29389113 - 29389279
Alignment:
Q  540 ttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaa-ccttaaaaaatacgttg 638  Q
    ||||||| ||| ||||| |||||||||| || |||||   ||| ||| |||| ||| ||||  | |||||||| | |||||| |||| ||||| ||||||    
T  29389113 ttcttttcccaccctatgagtttctcgcacgtcctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaacacgttg 29389212  T
Q  639 aaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggcc 706  Q
    ||| |||||  |||||| ||||||||||||||| | | |||||| |||||||||||||||||||||||    
T  29389213 aaacatttcggattttaaaatctgaatagggcgtgcgagaaatt-atagggtggaaaaagtaatggcc 29389279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 535 - 672
Target Start/End: Original strand, 33240802 - 33240938
Alignment:
Q  535 actgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctat-aaaaccttaaaaaata 633  Q
    |||||||||||| |||||||||||| ||||||| ||||||||   ||||||| | |||||| ||||  ||||||| || | || |||||||| ||||  |    
T  33240802 actgtttcttttcccatcctataagcttctcgcacgccctatacagtttggattttagaatccgaactgtataaataccccataaaaaccttcaaaa--a 33240899  T
Q  634 cgttgaaatatttcaaattttagaatctgaatagggcgc 672  Q
    ||||||||||||||  ||||||||||| |||||||||||    
T  33240900 cgttgaaatatttcggattttagaatccgaatagggcgc 33240938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 552 - 706
Target Start/End: Original strand, 6541956 - 6542107
Alignment:
Q  552 cctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatatttcaaat 651  Q
    ||||| ||||||||||||||| ||||| ||| ||| |||| ||| ||||    ||||| |||| |||||| ||| ||||  ||||| ||||||||  |||    
T  6541956 cctatcagtttctcgcgcgccttatgtagttcggattataaaatccgaac---ataaatactccataaaatcttcaaaagcacgttaaaatattttgaat 6542052  T
Q  652 tttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggcc 706  Q
    ||||||||||||||||| | |  | |||| ||||| ||| |||||||||||||||    
T  6542053 tttagaatctgaataggacacacgagaaactcatacggttgaaaaagtaatggcc 6542107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 588 - 701
Target Start/End: Original strand, 9540530 - 9540643
Alignment:
Q  588 tatagaattcgaatggtataaacactctataaaa-ccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcata 686  Q
    |||| |||| |||||  |||||||| |||||||| |||| ||||| ||| | | |||||||| |||||||||||||||||||||||||| |||| |||||    
T  9540530 tataaaatttgaatgacataaacaccctataaaatccttcaaaaa-acggtaagatatttcagattttagaatctgaatagggcgcgtgagaaactcata 9540628  T
Q  687 gggtggaaaaagtaa 701  Q
    || ||  ||||||||    
T  9540629 ggatgagaaaagtaa 9540643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 616 - 668
Target Start/End: Original strand, 20207190 - 20207242
Alignment:
Q  616 ataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagg 668  Q
    |||||| ||| ||||| |||||||||||||||| |||||||||||||||||||    
T  20207190 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaatagg 20207242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 616 - 668
Target Start/End: Original strand, 22101213 - 22101265
Alignment:
Q  616 ataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagg 668  Q
    |||||| ||| ||||| |||||||||||||||| |||||||||||||||||||    
T  22101213 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaatagg 22101265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 605 - 702
Target Start/End: Original strand, 6978500 - 6978598
Alignment:
Q  605 ataaacactctataaaaccttaaaaaat-acgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaat 702  Q
    ||||| |||| |||||||||  |||||| |||||||||||||| | |||||||||||  |||||| |||  | |||| ||||||| |||||||||||||    
T  6978500 ataaaaactccataaaacctccaaaaattacgttgaaatattttagattttagaatccaaataggacgcacgagaaactcataggatggaaaaagtaat 6978598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 627 - 671
Target Start/End: Complemental strand, 989559 - 989515
Alignment:
Q  627 aaaaatacgttgaaatatttcaaattttagaatctgaatagggcg 671  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||    
T  989559 aaaaacacgttgaaatatttcagattttagattctgaatagggcg 989515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 588 - 646
Target Start/End: Complemental strand, 2396823 - 2396765
Alignment:
Q  588 tatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatattt 646  Q
    |||||||||||||||  |||||||| |||||||| | || |||||||||| ||||||||    
T  2396823 tatagaattcgaatgacataaacaccctataaaaacctacaaaatacgttaaaatattt 2396765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 628 - 690
Target Start/End: Original strand, 18075563 - 18075625
Alignment:
Q  628 aaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggt 690  Q
    |||| ||||| |||||||||| |||||| ||| |||||||||||| || |||| |||||||||    
T  18075563 aaaagacgttaaaatatttcagattttataatttgaatagggcgcatgagaaactcatagggt 18075625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 627 - 673
Target Start/End: Complemental strand, 33450876 - 33450830
Alignment:
Q  627 aaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcg 673  Q
    ||||| ||||||||||||||| |||||||||||| ||||||| ||||    
T  33450876 aaaaacacgttgaaatatttcgaattttagaatccgaataggacgcg 33450830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 588 - 702
Target Start/End: Complemental strand, 34949088 - 34948974
Alignment:
Q  588 tatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatag 687  Q
    |||| ||||| ||||| |||||||| |||||||| |||  |||| |  || |||||||||  ||||||||||| ||| || || ||||  ||| |||||     
T  34949088 tatataattcaaatggcataaacaccctataaaatcttccaaaacatattcaaatatttcgtattttagaatcagaacagagcacgtgaaaaactcataa 34948989  T
Q  688 ggtggaaaaagtaat 702  Q
    |||||||||||||||    
T  34948988 ggtggaaaaagtaat 34948974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 616 - 705
Target Start/End: Original strand, 32826711 - 32826800
Alignment:
Q  616 ataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggc 705  Q
    |||||||||  |||||  ||||||||||||| ||||||||||||   |||||  |||| | |||| ||||||  ||||||||||||||||    
T  32826711 ataaaacctccaaaaactcgttgaaatatttaaaattttagaattcaaatagaacgcgcgagaaactcatagaatggaaaaagtaatggc 32826800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 537 - 707
Target Start/End: Original strand, 27157622 - 27157792
Alignment:
Q  537 tgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgt 636  Q
    |||||||||| ||| ||||| ||||| ||| ||||||||||   || ||| |||||||| ||||||| ||||| || | |||||| ||  ||||  ||||    
T  27157622 tgtttcttttcccaccctatcagtttatcgtgcgccctatgcatttcggattatagaatccgaatggcataaataccccataaaatctccaaaaccacgt 27157721  T
Q  637 tgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggcca 707  Q
    ||||||| |||  ||||||||||| ||||||  |||  | |||| ||||||||||||||||||||||||||    
T  27157722 tgaaataattcggattttagaatccgaatagcacgcacgagaaactcatagggtggaaaaagtaatggcca 27157792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 627 - 705
Target Start/End: Complemental strand, 44173219 - 44173141
Alignment:
Q  627 aaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggc 705  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| | ||| || ||| | |||||||||| |||||    
T  44173219 aaaaatacgttgaaatatttctgattttagaatctgaatagggcgcgcgagaattttataagatggaaaaagtgatggc 44173141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 533 - 688
Target Start/End: Complemental strand, 7632821 - 7632665
Alignment:
Q  533 agactgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaa-ccttaaaaaa 631  Q
    |||||| ||||||||||||||||||||||| |||  || | ||||   || | | ||||||||  ||| |  |||||||| | |||||| |||| |||||    
T  7632821 agactgcttctttttccatcctataagtttttcgtacgtcatatgcaattcgaattatagaatctgaacgacataaacacccgataaaaaccttcaaaaa 7632722  T
Q  632 tacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagg 688  Q
    |||||||||||||||||||||||| ||| |||||| || || || |||| |||||||    
T  7632721 tacgttgaaatatttcaaattttaaaatttgaataaggtgcatgtgaaactcatagg 7632665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 40899737 - 40899651
Alignment:
Q  588 tatagaattcgaatggtataaacactctataaaa-ccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcg 673  Q
    |||| |||||||| || |||||||| | |||||| |||| ||||| ||||| |||||||||| |||||| |||||||||||||||||    
T  40899737 tataaaattcgaaaggcataaacaccccataaaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatagggcgcg 40899651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 616 - 707
Target Start/End: Complemental strand, 3103825 - 3103734
Alignment:
Q  616 ataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggcca 707  Q
    |||||| ||| ||||| |||||||||||||| | |||||| |||||||||| || ||| | |||||| ||| |||  |||||||||||||||    
T  3103825 ataaaatcttcaaaaacacgttgaaatattttagattttaaaatctgaataaggtgcgcgagaaatttataaggtacaaaaagtaatggcca 3103734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 534 - 668
Target Start/End: Original strand, 9045628 - 9045762
Alignment:
Q  534 gactgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaata 633  Q
    ||||||||||||||| ||||||||||||| || |||  |||||    |||| | | || |||||| |  | ||||| |||| |||||||||  ||||| |    
T  9045628 gactgtttctttttctatcctataagtttgtcacgcatcctatacaatttgaattttaaaattcggactgcataaaaactccataaaacctccaaaaaca 9045727  T
Q  634 cgttgaaatatttcaaattttagaatctgaatagg 668  Q
    ||||||||||||||| |||||  ||||||||||||    
T  9045728 cgttgaaatatttcagatttttaaatctgaatagg 9045762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 701
Target Start/End: Complemental strand, 37507608 - 37507535
Alignment:
Q  628 aaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaa 701  Q
    |||| ||||||||| |||||  ||||||||||  ||||||||||||   |||| ||||||||||| ||||||||    
T  37507608 aaaacacgttgaaacatttcggattttagaattcgaatagggcgcgcaagaaactcatagggtgggaaaagtaa 37507535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 605 - 697
Target Start/End: Complemental strand, 24166886 - 24166794
Alignment:
Q  605 ataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaa 697  Q
    ||||| |||| |||||||||  ||||| | ||||||||||||| ||||| |||||| |||||||||||||| |||| ||||||||||||||||    
T  24166886 ataaaaactccataaaacctctaaaaacatgttgaaatatttcgaatttaagaatccgaatagggcgcgtgagaaactcatagggtggaaaaa 24166794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 558 - 667
Target Start/End: Original strand, 4377133 - 4377242
Alignment:
Q  558 agtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttaga 657  Q
    ||||||||||||| | ||| | ||| ||| ||| ||||| ||||| ||||||||| | ||||||| || ||||| ||||| ||||||||| |||||||||    
T  4377133 agtttctcgcgcgtcttatatagttcggattatggaatttgaatgatataaacaccccataaaacttttaaaaacacgttaaaatatttccaattttaga 4377232  T
Q  658 atctgaatag 667  Q
    ||||||||||    
T  4377233 atctgaatag 4377242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 540 - 701
Target Start/End: Complemental strand, 24511054 - 24510893
Alignment:
Q  540 ttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttga 639  Q
    |||||||| || ||||| | |||||||||  |||||||  ||| | | |||||||||| || || |||||||  | |||||| | |  |||||||||| |    
T  24511054 ttcttttttcaacctatgaatttctcgcgttccctatgcagttcgaattatagaattcaaacggcataaacatcccataaaaacctccaaaatacgttta 24510955  T
Q  640 aatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaa 701  Q
    ||||||||| |||||| |||| |||||||| | |||  ||| ||||||||||||||||||||    
T  24510954 aatatttcagattttaaaatccgaatagggtgtgtgaaaaactcatagggtggaaaaagtaa 24510893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 628 - 702
Target Start/End: Original strand, 28816193 - 28816267
Alignment:
Q  628 aaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaat 702  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||||  | |||| | ||| |||||||||||||||    
T  28816193 aaaacacgttgaaatatttaaaattttataatttgaatagggcgcacgagaaacttataaggtggaaaaagtaat 28816267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 537 - 704
Target Start/End: Original strand, 38308024 - 38308191
Alignment:
Q  537 tgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaacctta-aaaaatacg 635  Q
    |||||||||| ||| ||||| | ||||||| | | | ||||  ||||| | |||||||| |||| || |||||||| |||||||| |||  ||||| |||    
T  38308024 tgtttcttttcccaccctattaatttctcgtgtgtcttatgcagtttgaattatagaatccgaacggcataaacaccctataaaaactttcaaaaacacg 38308123  T
Q  636 ttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatgg 704  Q
    |||||| |||||| |||||| ||   ||||||||||||   || | || ||||||||||||||||||||    
T  38308124 ttgaaacatttcagattttaaaactagaatagggcgcgcaagacactc-tagggtggaaaaagtaatgg 38308191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 621 - 706
Target Start/End: Complemental strand, 2391662 - 2391577
Alignment:
Q  621 accttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggcc 706  Q
    ||||||||||||| |||||||||||||  |||||||||||  ||||| ||||| | |||| ||||||| || ||||||||||||||    
T  2391662 accttaaaaaatatgttgaaatatttcggattttagaatccaaatagtgcgcgcgagaaactcataggatgaaaaaagtaatggcc 2391577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 540 - 709
Target Start/End: Original strand, 22713372 - 22713541
Alignment:
Q  540 ttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaa-ccttaaaaaatacgttg 638  Q
    ||||||| ||||| ||| |||||||| ||| | |||| | |||| || |||| ||| ||||||| |||||||| || ||||| |||  ||||| ||||||    
T  22713372 ttcttttcccatcttatgagtttctcacgcactctatatagtttagattataaaatccgaatggcataaacaccctgtaaaaacctccaaaaacacgttg 22713471  T
Q  639 aaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggccaaa 709  Q
    |||||||||| |||||| |||   |||| |||||  | |||| ||||| ||||||||||||||||| ||||    
T  22713472 aaatatttcagattttaaaattcaaata-ggcgcacgagaaactcataaggtggaaaaagtaatggtcaaa 22713541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 590 - 704
Target Start/End: Complemental strand, 44453707 - 44453593
Alignment:
Q  590 tagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcataggg 689  Q
    |||||| ||||  ||||||| |||| ||||||| |  ||||| ||||||||||||||| |||||||||||| ||||||| ||   | |||| | ||||||    
T  44453707 tagaatccgaactgtataaagactccataaaacttccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgtacgagaaacttataggg 44453608  T
Q  690 tggaaaaagtaatgg 704  Q
    || ||||||||||||    
T  44453607 tgaaaaaagtaatgg 44453593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 538 - 702
Target Start/End: Original strand, 3255078 - 3255242
Alignment:
Q  538 gtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaa-ccttaaaaaatacgt 636  Q
    ||||||||||| | ||||| ||||||||| | || |||||  ||| ||| |||| |||  ||| || |||||||| | |||||| |||| |||||||  |    
T  3255078 gtttctttttc-accctatgagtttctcgtgtgctctatgcagttcggattatataatcagaacggcataaacaccccataaaaaccttcaaaaatatat 3255176  T
Q  637 tgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaat 702  Q
    |||||||||| | ||||||||||| |||||| ||||| | |||| |||||| || |||||||||||    
T  3255177 tgaaatattttagattttagaatccgaatagagcgcgcgagaaactcatagagtagaaaaagtaat 3255242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 537 - 703
Target Start/End: Complemental strand, 17116044 - 17115879
Alignment:
Q  537 tgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaacctta-aaaaatacg 635  Q
    ||||||||||| ||  |||| |||||||||| || |||| |  ||||| | ||||||||||||| |  |||||||| | |||||| |||  ||||| |||    
T  17116044 tgtttcttttttca--ctatgagtttctcgcacgtcctacgcagtttgtattatagaattcgaacgacataaacaccccataaaaactttcaaaaacacg 17115947  T
Q  636 ttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatg 703  Q
    ||||||||||| | |||||| ||||  |||||  |||| || ||| ||||||| | ||||||||||||    
T  17115946 ttgaaatattttagattttaaaatccaaatagaacgcgaggaaaactcataggatagaaaaagtaatg 17115879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 632 - 666
Target Start/End: Complemental strand, 29018163 - 29018129
Alignment:
Q  632 tacgttgaaatatttcaaattttagaatctgaata 666  Q
    ||||||||||||||||||| |||||||||||||||    
T  29018163 tacgttgaaatatttcaaagtttagaatctgaata 29018129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 616 - 705
Target Start/End: Original strand, 9603878 - 9603967
Alignment:
Q  616 ataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggc 705  Q
    |||||||||  ||||||||||| |||||||||| |||||||||| |||||||| |||| | |||  ||||||||||| |||| |||||||    
T  9603878 ataaaacctccaaaaatacgttaaaatatttcagattttagaatttgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 9603967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 558 - 660
Target Start/End: Complemental strand, 17349648 - 17349547
Alignment:
Q  558 agtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttaga 657  Q
    |||||||||  |||| ||||| ||||||| |||||||||  || |  |||||||||||||||| ||||  |||||| ||| ||| |||||||||||||||    
T  17349648 agtttctcgtacgccttatgtagtttggattatagaatttaaacgtcataaacactctataaa-cctttcaaaatatgttaaaacatttcaaattttaga 17349550  T
Q  658 atc 660  Q
    |||    
T  17349549 atc 17349547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 702
Target Start/End: Complemental strand, 30441443 - 30441368
Alignment:
Q  627 aaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaat 702  Q
    |||||||||||||||| ||||  |||||||||||| ||||||| ||  | |||  ||||||||||| |||||||||    
T  30441443 aaaaatacgttgaaatgtttcggattttagaatctaaatagggtgcacgagaagctcatagggtgggaaaagtaat 30441368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 538 - 703
Target Start/End: Original strand, 7439021 - 7439185
Alignment:
Q  538 gtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgtt 637  Q
    ||||||||||||| ||||| |||||||| |||||| |||||  || ||| | || ||| ||||  |||||||  | | |||||||||| ||||| |||||    
T  7439021 gtttctttttccaccctatgagtttctcacgcgccttatgtaattcggattttataatccgaaccgtataaaatccc-ataaaaccttcaaaaacacgtt 7439119  T
Q  638 gaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatg 703  Q
    ||||||||| | |||||||||| |||||||| |||| | |||  ||||||| ||  ||||||||||    
T  7439120 gaaatattttagattttagaatttgaataggacgcgcgagaatctcataggatgagaaaagtaatg 7439185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 605 - 709
Target Start/End: Original strand, 17339741 - 17339845
Alignment:
Q  605 ataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatgg 704  Q
    |||||| |||||||||| | |  |||| || || |||||||||| |||||||||||||||||||||   || |||| | ||||| ||||||||||||||     
T  17339741 ataaactctctataaaaacctccaaaacacatttaaatatttcagattttagaatctgaatagggcatatgagaaactgataggatggaaaaagtaatgt 17339840  T
Q  705 ccaaa 709  Q
    |||||    
T  17339841 ccaaa 17339845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 618 - 673
Target Start/End: Complemental strand, 48779740 - 48779685
Alignment:
Q  618 aaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcg 673  Q
    |||||||| ||||| | ||||||||||||| |||||||||||| ||||||||||||    
T  48779740 aaaaccttcaaaaacatgttgaaatatttcgaattttagaatccgaatagggcgcg 48779685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 666
Target Start/End: Complemental strand, 6950276 - 6950225
Alignment:
Q  615 tataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaata 666  Q
    |||||||| || ||||||||||||||||||||  |||||||||||| |||||    
T  6950276 tataaaacttttaaaaatacgttgaaatattttgaattttagaatccgaata 6950225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 706
Target Start/End: Original strand, 31767937 - 31768028
Alignment:
Q  616 ataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcata-gggtggaaaaagtaatggcc 706  Q
    ||||||| || ||||| |||||||||||||||  |||||| ||||  ||||||||||||| |||   |||| |||||| |||||||||||||    
T  31767937 ataaaactttcaaaaacacgttgaaatatttcggattttaaaatccaaatagggcgcgtgagaagcgcataggggtgggaaaagtaatggcc 31768028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 673
Target Start/End: Original strand, 38091249 - 38091304
Alignment:
Q  618 aaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcg 673  Q
    |||||||| || || ||| ||||||||||| |||||||||||||||||||| ||||    
T  38091249 aaaaccttcaataacacggtgaaatatttcgaattttagaatctgaataggacgcg 38091304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 616 - 706
Target Start/End: Original strand, 31577997 - 31578086
Alignment:
Q  616 ataaaaccttaaaaaatacgttgaaatatttcaaattttagaatctgaatagggcgcgtgggaaattcatagggtggaaaaagtaatggcc 706  Q
    |||||||||  ||||| |||||||||||||||  |||||||||||  ||||||||||| | |||  ||||| ||||| |||||||| ||||    
T  31577997 ataaaacctccaaaaacacgttgaaatatttcggattttagaatccaaatagggcgcgcgagaagctcata-ggtgggaaaagtaacggcc 31578086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 558 - 659
Target Start/End: Complemental strand, 563933 - 563832
Alignment:
Q  558 agtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttaga 657  Q
    ||||||||||||| |||||   ||| | | |||||||||  ||||  |||||||| |||||||| | | ||||| ||||| | |||||||||||||||||    
T  563933 agtttctcgcgcgacctatacagttcgaattatagaatttaaatgacataaacaccctataaaatcctcaaaaacacgttaacatatttcaaattttaga 563834  T
Q  658 at 659  Q
    ||    
T  563833 at 563832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 559 - 664
Target Start/End: Original strand, 15322236 - 15322341
Alignment:
Q  559 gtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaatacgttgaaatatttcaaattttagaa 658  Q
    |||||||||| ||  |||||  |||||| |||| ||||| || |  ||||||||| ||||||| ||   |||||||||| ||||||||  ||||||||||    
T  15322236 gtttctcgcgtgcattatgtaatttggattataaaattcaaacgacataaacactttataaaatctatcaaaatacgttaaaatattttgaattttagaa 15322335  T
Q  659 tctgaa 664  Q
    ||||||    
T  15322336 tctgaa 15322341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 642
Target Start/End: Original strand, 30527649 - 30527758
Alignment:
Q  533 agactgtttctttttccatcctataagtttctcgcgcgccctatgtggtttggaatatagaattcgaatggtataaacactctataaaaccttaaaaaat 632  Q
    |||||||||||||| |||||||||  ||||||| |||| ||||||  | ||||| | |||||| |||| || ||||| |  | |||||||||  |||||     
T  30527649 agactgtttcttttcccatcctatgtgtttctcacgcgtcctatgcagattggattttagaatccgaacggcataaaaaacccataaaacctccaaaaac 30527748  T
Q  633 acgttgaaat 642  Q
    ||||||||||    
T  30527749 acgttgaaat 30527758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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