View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5044-Insertion-3 (Length: 745)
Name: NF5044-Insertion-3
Description: NF5044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5044-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 8 - 735
Target Start/End: Complemental strand, 8567418 - 8566685
Alignment:
| Q |
8 |
ttaatttgtgagtttttatagtttttgggatcatgcagtgtttatgcggcataatagtgtgaggttcttaaaggtttgaggttgga------tcataccc |
101 |
Q |
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| T |
8567418 |
ttaatttgtgagtttttatagtttttgggatcatgtagtgtttatgcggcattatagtgtgaggttcttaaagatttgaggttggacttggatcaaaccc |
8567319 |
T |
|
| Q |
102 |
atagctttaggagggtgaaactttatgttgaatataatgtagttttcttaagtgtttagttagatgttttcaaatatttgagagtttgatgattgatttc |
201 |
Q |
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| T |
8567318 |
atagctttaggagggtgaaactttatgttgaatataatgtagttttcttaagtgtttagttagatgttttcaaatatttgagagtttgatgattgatttc |
8567219 |
T |
|
| Q |
202 |
tttagaaaatttgtaatttaataagagatgtcttgaaattgtcgagtttatcacaacaaagaacaatccaaatctcaatcctttcaattgttatgggaat |
301 |
Q |
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| T |
8567218 |
tttagaaaatttgtaatttaataaaagatgtcttgaaattgtcgagtttatcacaacaaagaacaatccaaatctcaatcctttcaattgttatgggaat |
8567119 |
T |
|
| Q |
302 |
tcaagtataatggcaaggtaactctaaaataattaatgtcatcttcaaggtacaaagacgtgctttacaaacataaccctcttctctcatggttgttatg |
401 |
Q |
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| T |
8567118 |
tcaagtataatggcaaggtaactctaaaataattaatgtcatcttcaaggtacaaagacgtgctttacaaacataaccctcttctctcatggttgttatg |
8567019 |
T |
|
| Q |
402 |
ttggtaaaatccattaaatccaattacctatgtcaccccaagagtttttagactactctaatgtttacaaatccttgtctaatcttataagttcaacaat |
501 |
Q |
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| T |
8567018 |
ttgctaaaatccattaaatccaattacctatgtcaccccaagagtttatagactactctcatgtttacaaatccttgtctaatcttataagttcaacaat |
8566919 |
T |
|
| Q |
502 |
atccactatctttctataaatattgttgccttgatttttcttaaaagcaataaaattagattggactttgaaacaccacaataaaagaaaataaagagat |
601 |
Q |
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| T |
8566918 |
atccactatctttctataaatattgttgccttgatttttcttaaaagcaataaaattagattggactttgaaacaccacaataaaagaaaataaagagat |
8566819 |
T |
|
| Q |
602 |
catggatagttcattctggtggggcttctaacacatacattgcatgtattccatccaagtgagacttataattcacacttgacatataacaactcatcat |
701 |
Q |
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| T |
8566818 |
catggatagttcatcctggtggggcttctaacacatatattgcatgtatttcatacaagtgggacttataactcacacttgacatataacaactcatcat |
8566719 |
T |
|
| Q |
702 |
atgtaaattcttccattcatctcgatatgctccc |
735 |
Q |
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| T |
8566718 |
atgtaaattcctccattcatctcggtatgctccc |
8566685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 42452316 - 42452252
Alignment:
| Q |
527 |
ttgccttgatttttcttaaaagcaataaaattagattggactttgaaacaccacaataaaagaaa |
591 |
Q |
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|||| |||||||||||||||| | |||| ||||||||||||||||||| |||||| |||||||| |
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| T |
42452316 |
ttgctttgatttttcttaaaaacgataagattagattggactttgaaatcccacaacaaaagaaa |
42452252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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