View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5044-Insertion-4 (Length: 544)
Name: NF5044-Insertion-4
Description: NF5044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5044-Insertion-4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 544
Target Start/End: Complemental strand, 496113 - 495586
Alignment:
| Q |
23 |
ttagaaaactgtagacttacttctaggaccttcctaattaaaacttacttctagtttttcataattaaagcacttctagatttttacataaatattatga |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
496113 |
ttagaaaactgtagacttacttctaagaccttcctaattaaaatttacttctagtttttcataattaaagcacttctagatttttgcatagatattatga |
496014 |
T |
|
| Q |
123 |
aaactctaactaattctagaccc-gtctatatttcaaatta-------------ttgttccagtaaccatgttatgattatatttannnnnnngactgca |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| || ||| |||| ||||||||| ||||||||| ||||||| |
|
|
| T |
496013 |
aaactctaactaattctagactttgtctatatttcaaatttatatttaagaatgttcttctggtaatcatgttatggttatatttattttt--gactgca |
495916 |
T |
|
| Q |
209 |
ccttagtctactggtcattatttatcaagttgtgaagtgcactttgaatgccttcccttgcacatatctctttggccctgatatacctacatcttttttc |
308 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
495915 |
cattagtccactggtcattatttatcaagttgtgaagt------ttaatgccttcccttgcacatatctctttagctctgatatacctacatcttttttc |
495822 |
T |
|
| Q |
309 |
ttgtggttccaggaacctcgtcacttccgatgtggctttgacattgttcttcctttgcatcgtaagtatattgatttgcatggaaatcctttgattccac |
408 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
495821 |
ttctggttccaggaacctcgtcacttccgatgtggctttgacattgttcttcctttgcatcgtaagcatattgatttgcatggaaaccctttgattccac |
495722 |
T |
|
| Q |
409 |
agtggtttgatcacaagtttgagaaaggttcaataataaggataaagaactctaatatgcatgttgactgggttggttttgccttttgtgtggcatttca |
508 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
495721 |
agtggtttgattacaagtttgagaaaggttcaataataacgataaagaactctaatatgcatgttgactgggttggttttgccttttgtgtggcatttca |
495622 |
T |
|
| Q |
509 |
aatagataatccccctgcagtatctggttctccata |
544 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
495621 |
aatagataatcgcccggcagtatctggttctccata |
495586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 25641883 - 25641931
Alignment:
| Q |
318 |
caggaacctcgtcacttccgatgtggctttgacattgttcttcctttgc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
25641883 |
caggaacctcgtcacttccgatgtggctttgacattattattcctttgc |
25641931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 25492075 - 25492120
Alignment:
| Q |
318 |
caggaacctcgtcacttccgatgtggctttgacattgttcttcctt |
363 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
25492075 |
caggaacctcgtcactttcggtgtggctttgacattgttattcctt |
25492120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University