View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5044_high_1 (Length: 360)
Name: NF5044_high_1
Description: NF5044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5044_high_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 52038941 - 52039270
Alignment:
| Q |
41 |
cagtgttaaagaacctaaggttatagtctcatagatttcttta--------tctttgtctgacacaaacactcggggccaatactccaacctatagttgt |
132 |
Q |
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| T |
52038941 |
cagtgttgaagaacctaagattatagtctcatagatttctttatcagtttatctttgtccgacacaaacactcggagccaatactccaacctatagttgt |
52039040 |
T |
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| Q |
133 |
actcaacaacacttgatttcttctcatgattgctccctcacattacaacctctattctcgcatgacaactccatcaatattaattccaattatttgtttc |
232 |
Q |
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| T |
52039041 |
attcaacaacacttgatttcttctcatgattgctccctcatattacagcctctattcttgcatgacaactccatccatattaattccaattatttgtttc |
52039140 |
T |
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| Q |
233 |
cctggactcatgcataacggttccatcaaattatttatttgtcatgacttattcataatcgttctttcaatttgtagtctcattctaaccatagcagctc |
332 |
Q |
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| T |
52039141 |
cctggattcatgcataacggttccatcaaattatttatttgtcatgacttattcataatctttctttcaatttgtagtctcattctaaccatagcagctc |
52039240 |
T |
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| Q |
333 |
cctcattcttac--cttgcaaaacatgtac |
360 |
Q |
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| T |
52039241 |
cctcattcttacattttgcaaaacatgtac |
52039270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 53552711 - 53552854
Alignment:
| Q |
119 |
caacctatagttgtactcaacaacacttgatttcttctcatgattgctccctcacattacaacctctattctcgcatgacaactccatcaatattaattc |
218 |
Q |
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| T |
53552711 |
caacctatatgtgtactcaacaacactttatttcttctcatgacagct--ctttcattacaacctctattcttgaatgacagctccatcaatattaattc |
53552808 |
T |
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| Q |
219 |
caattatttgtttccctggactcatgcataacggttccatcaaatt |
264 |
Q |
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| T |
53552809 |
caattatttctttcccttgacccatgcataacggttccttcaaatt |
53552854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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