View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5044_low_1 (Length: 679)
Name: NF5044_low_1
Description: NF5044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5044_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 18 - 671
Target Start/End: Complemental strand, 21508940 - 21508287
Alignment:
| Q |
18 |
atgagaattccctcaaattagtgagaaattcagaaaaccctaatttttcaattgaattcgtcgatgataattgacgaaccttcttctctcgttccttcct |
117 |
Q |
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| T |
21508940 |
atgagaattccctcaaattagtgagaaattcagaaaaccctaatttttcaattgaattcgtggatgataattgacgaaccttcttctctcgttccttcct |
21508841 |
T |
|
| Q |
118 |
cttcgcactcttgaaattcgtgttttcaaccgttggatcagaaacacatccaccttcttcagtctccggtagctcatccttcacctgcggcaagttcggc |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21508840 |
cttcgcactcttgaaattcgtgttttcaactgttggatcagagacacatccaccttcttcagtctccggtagctcatccttcacctgcggcaagttcggc |
21508741 |
T |
|
| Q |
218 |
gagtttgtggaattttctccggcaaaaacggagaatctagcggcgcgttcaaccaacgcggcgttggaagggaaagttaaattaccggtgttgcaagtca |
317 |
Q |
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| T |
21508740 |
gagtttgtggaattttctccggcgaaaacggagaatctagcggcgcgttcaaccaacgcggcgttggaagggaaagttaaattaccggtgttgcaagtca |
21508641 |
T |
|
| Q |
318 |
gtggatagggtttcggtggttttccggtaatctccgacgagtgaagaagctcaacgacctgcgtcggtggtagttcaagaagtgcggtgaaagagttcgc |
417 |
Q |
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| T |
21508640 |
gtggatagggtttcggtggttttccggtaatctccgacgagtgaagaagctcaacgacctgcgtcggtggaagttcaagaagtgcggtgaaagagttcgc |
21508541 |
T |
|
| Q |
418 |
tgtttccgtcgccggagccatgattccttgaatttcttcattgaattgaatcgactcgaacgtggtttgttccatcgttcaactgaaccaaaccgaaatg |
517 |
Q |
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| T |
21508540 |
tgtttccgtcgccggagccatgattccttgaatttcttcattgaattgaatcgactcgaacgtggtttgttccatcgtttaactgaaccaaaccgaaatg |
21508441 |
T |
|
| Q |
518 |
aaacggttcgagaaaactccgaaaacccaaaaaccggagttaactgtgtaagttgttgggggagaatgaaggagggaaagaaagagagtggaaaaagagt |
617 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21508440 |
aaccggtttgagaaaactccgaaaacccaaaaaccggagttaactgtgtaagttgttgggggagaatgaaggagggaaagaaagagagtggaaaaagagt |
21508341 |
T |
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| Q |
618 |
gaaatgtgtgttttataatgtgcttattatttttattctgtgttggttcatctc |
671 |
Q |
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||| | |||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
21508340 |
gaagtctgtgttttataatgtgcttattatttttgttctgtgttggttcttctc |
21508287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 36672190 - 36672263
Alignment:
| Q |
227 |
gaattttctccggcaaaaacggagaatctagcggcgcgttcaaccaacgcggcgttggaagggaaagttaaatt |
300 |
Q |
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||||| |||||||| || || |||||| | ||||||||||||| |||||||||||| | ||| ||||||||||| |
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| T |
36672190 |
gaattctctccggcgaacactgagaatttcgcggcgcgttcaatcaacgcggcgttagtaggaaaagttaaatt |
36672263 |
T |
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