View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5044_low_2 (Length: 257)
Name: NF5044_low_2
Description: NF5044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5044_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 1738270 - 1738049
Alignment:
| Q |
17 |
agcaaaggcagggaaaagaagtgcatatatatatagttatcaatcaccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaa |
116 |
Q |
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| T |
1738270 |
agcaaaggcagggaaaagaagtgcatatatatatagttatcaatctccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaa |
1738171 |
T |
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| Q |
117 |
taaaataagtgcactcatgttggttatgtaagtcaaactaaacaaaaat-aataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatg |
215 |
Q |
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| T |
1738170 |
taaaataagtgcactcatgttggttatgtaagtcaaactaaacaaaaataaataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatg |
1738071 |
T |
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| Q |
216 |
gaagtatgtagatctagtagtg |
237 |
Q |
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| T |
1738070 |
gcagtatgtagatctagtagtg |
1738049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 1716829 - 1716649
Alignment:
| Q |
70 |
taaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtca------------aactaa |
157 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||| | || ||||||| |||||||||||||||||| || ||||| |
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| T |
1716829 |
taaaataatgtcgttgaagtttcaagtgcactcatgttttaaaaaaaaataaaaagtgcaatcatgttggttatgtaaggcaagctataataataactat |
1716730 |
T |
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| Q |
158 |
acaaaaat-aataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtg |
237 |
Q |
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|||||||| ||||||||||||||| ||| |||||||||||| || |||||||||||||| | |||||||||||||||||| |
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| T |
1716729 |
acaaaaataaataaaaggagctttatttcagaaatgagtcaatgataatttcatgaatgacaatatgtagatctagtagtg |
1716649 |
T |
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