View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5045-Insertion-1 (Length: 328)
Name: NF5045-Insertion-1
Description: NF5045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5045-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 53986978 - 53986677
Alignment:
| Q |
8 |
taaattgccctctttctataagaaacagagatttccattttgtcctatcagacttaacagttcacatttaccatttaaatttcattatagatttcacttg |
107 |
Q |
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| T |
53986978 |
taaattgccctctttctataacaaacagagatttccattttgtcctatcagacttaacagttcacatttaccatttaaatttcattatagatttcacttg |
53986879 |
T |
|
| Q |
108 |
ttacaaacgttttatagctagctgatacaacttttttaataggagttgtaaatttaaattaacnnnnnnnttgtttaaccannnnnnnaaggaaaaaata |
207 |
Q |
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| T |
53986878 |
ttgcaaacgttttatagctagctggtacaacttttttaataggagttgtaaatttaaattaacaaaaaaattgtttaaccatttttttaaggaagaaata |
53986779 |
T |
|
| Q |
208 |
tatgtaaccataaaccctaataacaacaacatttaaatatgatttagtcctcgaattattttaattcaaaatttgtannnnnnnaatcattaaggtcatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53986778 |
tatgtaaccataaaccctaataacaacaacatttaaatatgatttagtcctcgaattattttaattcaaaatttgtatttttttaatcattaaggtcatt |
53986679 |
T |
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| Q |
308 |
tt |
309 |
Q |
| |
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|| |
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| T |
53986678 |
tt |
53986677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 53985795 - 53985759
Alignment:
| Q |
292 |
aatcattaaggtcattttatttggacatgtggtgtaa |
328 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
53985795 |
aatcattaaggtcattttatttggacatgtggcgtaa |
53985759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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