View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5045-Insertion-3 (Length: 140)
Name: NF5045-Insertion-3
Description: NF5045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5045-Insertion-3 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 41379901 - 41379780
Alignment:
| Q |
7 |
aaaaaggcgactaaaaggctcaacttctatcacaccatttacattagacatctcatcctc---ataaggttcatctgtttgatttgtttcatcactttca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
41379901 |
aaaaaggcgactaaaaggctcaacttctatcacaccatctacattagacatctcatcctcctgatacggttcatctgtttgatttgtttcatcactttca |
41379802 |
T |
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| Q |
104 |
attcgatcacccataccttgcc |
125 |
Q |
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|||||||||||||||| ||||| |
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| T |
41379801 |
attcgatcacccatactttgcc |
41379780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 11815 - 11710
Alignment:
| Q |
7 |
aaaaaggcgactaaaaggctcaacttctatcacaccatttacattagacatctcatcctc---ataaggttcatctgtttgatttgtttcatcactttca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||| |
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| T |
11815 |
aaaaaggcgactaaaaggctcaacttctatcacaccatctacattagacatctcatcctcctgatacggttcatctatttgatttgtttcagcactttca |
11716 |
T |
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| Q |
104 |
attcga |
109 |
Q |
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|||||| |
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| T |
11715 |
attcga |
11710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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