View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5045_low_2 (Length: 333)

Name: NF5045_low_2
Description: NF5045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5045_low_2
NF5045_low_2
[»] chr6 (3 HSPs)
chr6 (17-309)||(8323519-8323808)
chr6 (95-140)||(15613296-15613341)
chr6 (93-142)||(26214532-26214581)
[»] chr1 (3 HSPs)
chr1 (93-173)||(34104232-34104312)
chr1 (95-142)||(27910246-27910293)
chr1 (95-139)||(26580984-26581028)
[»] chr4 (4 HSPs)
chr4 (95-140)||(8139840-8139885)
chr4 (95-140)||(9264029-9264074)
chr4 (95-139)||(19547743-19547787)
chr4 (95-143)||(20316849-20316897)
[»] chr2 (7 HSPs)
chr2 (95-173)||(34368686-34368765)
chr2 (95-144)||(25937957-25938006)
chr2 (17-141)||(4450998-4451117)
chr2 (95-142)||(12556819-12556866)
chr2 (95-140)||(26292105-26292150)
chr2 (95-140)||(26652351-26652396)
chr2 (95-143)||(30682885-30682933)
[»] chr7 (5 HSPs)
chr7 (95-141)||(1732025-1732071)
chr7 (93-142)||(9891196-9891245)
chr7 (95-140)||(21884287-21884332)
chr7 (95-140)||(23007980-23008025)
chr7 (95-143)||(10991633-10991681)
[»] scaffold0086 (1 HSPs)
scaffold0086 (95-140)||(8768-8813)
[»] chr5 (4 HSPs)
chr5 (95-143)||(23013741-23013789)
chr5 (101-173)||(18751346-18751420)
chr5 (95-140)||(13692972-13693017)
chr5 (93-142)||(23032067-23032116)
[»] scaffold0340 (1 HSPs)
scaffold0340 (95-142)||(16327-16374)
[»] chr3 (3 HSPs)
chr3 (95-142)||(51119169-51119216)
chr3 (95-140)||(20886193-20886238)
chr3 (95-139)||(23055270-23055314)
[»] chr8 (2 HSPs)
chr8 (102-140)||(24114920-24114958)
chr8 (101-141)||(28318325-28318365)
[»] scaffold0085 (1 HSPs)
scaffold0085 (95-139)||(23388-23432)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 8323519 - 8323808
Alignment:
Q  17 tggttcaagaggaaggcaattgttagaagtatgaagggaagagtctctcctcgaccttcttcttcactttgaagtttattttgtttcttttgtaatttgt 116  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||   |||| ||||||||||| |||||||||||||||||    
T  8323519 tggttcaagaggaaggcaatcgttagaagcatgaagggaagagtctctcctcgaccttcttct---cttttaagtttattttatttcttttgtaatttgt 8323615  T
Q  117 ctttaattatcatgagttactaaacctaattggctaaaattctaagataaatctctaattgnnnnnnnnnnnnnnnnnattcaagtcttttgttgagttg 216  Q
     |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||                 |||||||||||||| |||||||    
T  8323616 ttttaattatcatgagttactaaacctaattgggtaaaattttaagataaatctctaattgattttttgattttttttattcaagtcttttgctgagttg 8323715  T
Q  217 tcttaatacttctcacttcaatacaattctaccatgaaatcaaagtctatcaaaacagttccacgaagtttatgttcatcttaacccgttcca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8323716 tcttaatacttctcacttcaatacaattctaccatgaaatcaaagtctatcaaaacagttccacgaagtttatgttcatcttaacccgttcca 8323808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 15613296 - 15613341
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  15613296 ttttatttctttcgtaatttgtctttagttatcatgagttactaaa 15613341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 26214532 - 26214581
Alignment:
Q  93 tattttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 142  Q
    |||||| |||||||||||||||||||||  ||| ||||||| ||||||||    
T  26214532 tattttatttcttttgtaatttgtcttttgttaccatgagtaactaaacc 26214581  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 34104312 - 34104232
Alignment:
Q  93 tattttgtttcttttgtaatttgtctttaattatcatgagttactaaacctaattggctaaaattctaagataaatctcta 173  Q
    |||||| |||||||||||||||||||||| ||| ||||| | ||||||||  ||||| || |||||||||||||| |||||    
T  34104312 tattttatttcttttgtaatttgtctttagttaccatgaataactaaaccctattgggtagaattctaagataaacctcta 34104232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 27910293 - 27910246
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 142  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  27910293 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaacc 27910246  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 26581028 - 26580984
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaa 139  Q
    |||||||| |||||| ||||||||||| ||||||||||| |||||    
T  26581028 ttttgtttgttttgttatttgtctttagttatcatgagtaactaa 26580984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 8139885 - 8139840
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||    
T  8139885 ttttatttcttttgtaatttgtctttaattatcatgagtaactaaa 8139840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 9264029 - 9264074
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  9264029 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 9264074  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 19547743 - 19547787
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaa 139  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||    
T  19547743 ttttatttcttttgtaatttgtctttagttaccatgagtaactaa 19547787  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 20316849 - 20316897
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacct 143  Q
    |||| ||||||||||||||| |||||| ||| ||||||| |||||||||    
T  20316849 ttttatttcttttgtaatttttctttagttaccatgagtaactaaacct 20316897  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 34368765 - 34368686
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacctaatt-ggctaaaattctaagataaatctcta 173  Q
    |||| ||||||||||||||||| |||| ||| ||||||| |||||||||  || ||||| |||||||||||||| |||||    
T  34368765 ttttatttcttttgtaatttgtttttagttaccatgagtaactaaacctttttaggctagaattctaagataaacctcta 34368686  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 25938006 - 25937957
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaaccta 144  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  25938006 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaaccta 25937957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 4451117 - 4450998
Alignment:
Q  17 tggttcaagaggaaggcaattgttagaagtatgaagggaagagtctctcctcgaccttcttcttcactttgaagtttattttgtttcttttgtaatttgt 116  Q
    ||||||||||||||||||| |||||| || || || ||| ||||||||| || |||||  | |||   ||  ||| | |||| |||||||| ||||||||    
T  4451117 tggttcaagaggaaggcaagtgttaggagcatcaaaggaggagtctctcgtcaacctt--tattc---ttagagtatgttttatttcttttataatttgt 4451023  T
Q  117 ctttaattatcatgagttactaaac 141  Q
     |||||||||||||||| |||||||    
T  4451022 ttttaattatcatgagtaactaaac 4450998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 12556819 - 12556866
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 142  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  12556819 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaacc 12556866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 26292150 - 26292105
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  26292150 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 26292105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 26652351 - 26652396
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  26652351 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 26652396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 30682885 - 30682933
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacct 143  Q
    |||| ||||| |||||||||||||||| ||| ||||||| |||||||||    
T  30682885 ttttatttctattgtaatttgtctttagttaccatgagtaactaaacct 30682933  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 1732071 - 1732025
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaac 141  Q
    |||| |||||||||||||||||||||| ||||||||||| |||||||    
T  1732071 ttttatttcttttgtaatttgtctttagttatcatgagtaactaaac 1732025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 9891245 - 9891196
Alignment:
Q  93 tattttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 142  Q
    |||||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  9891245 tattttatttcttttgtaatttgtctttagttaccatgagtaactaaacc 9891196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 21884287 - 21884332
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  21884287 ttttgtttcttttgtaatttgtctttagttaccatgagtaactaaa 21884332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 23008025 - 23007980
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  23008025 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 23007980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 10991633 - 10991681
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacct 143  Q
    |||| ||||||||||||||||||||||  || ||||||| |||||||||    
T  10991633 ttttatttcttttgtaatttgtctttaggtaccatgagtaactaaacct 10991681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 8813 - 8768
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| |||||||||||||||||||||| ||||||||||| ||||||    
T  8813 ttttatttcttttgtaatttgtctttagttatcatgagtaactaaa 8768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 23013741 - 23013789
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacct 143  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||||||    
T  23013741 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaacct 23013789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 18751420 - 18751346
Alignment:
Q  101 ttcttttgtaattt-gtctttaattatcatgagttactaaacc-taattggctaaaattctaagataaatctcta 173  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||| ||||||| ||  ||||||||||||| |||||    
T  18751420 ttcttttgtaattttgtctttagttaccatgagtaactaaaccctaattggataggattctaagataaacctcta 18751346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 13693017 - 13692972
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  13693017 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 13692972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 23032116 - 23032067
Alignment:
Q  93 tattttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 142  Q
    |||||| |||||||||||||||||||||| |||  |||||| ||||||||    
T  23032116 tattttatttcttttgtaatttgtctttagttacgatgagtaactaaacc 23032067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 16374 - 16327
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 142  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  16374 ttttatttcttttgtaatttgtctttagttagcatgagtaactaaacc 16327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 51119169 - 51119216
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaacc 142  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  51119169 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaacc 51119216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 20886238 - 20886193
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||    
T  20886238 ttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 20886193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 23055270 - 23055314
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaa 139  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||    
T  23055270 ttttatttcttttgtaatttgtctttagttaccatgagtaactaa 23055314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 24114920 - 24114958
Alignment:
Q  102 tcttttgtaatttgtctttaattatcatgagttactaaa 140  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  24114920 tcttttgtaatttgtctttagttatcatgagtaactaaa 24114958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 28318365 - 28318325
Alignment:
Q  101 ttcttttgtaatttgtctttaattatcatgagttactaaac 141  Q
    ||||||||||||||||||||| ||| ||||||| |||||||    
T  28318365 ttcttttgtaatttgtctttagttaccatgagtaactaaac 28318325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 23432 - 23388
Alignment:
Q  95 ttttgtttcttttgtaatttgtctttaattatcatgagttactaa 139  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||    
T  23432 ttttatttcttttgtaatttgtctttagttaccatgagtgactaa 23388  T

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