View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5045_low_3 (Length: 300)

Name: NF5045_low_3
Description: NF5045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5045_low_3
NF5045_low_3
[»] chr5 (4 HSPs)
chr5 (188-282)||(39626663-39626757)
chr5 (33-109)||(39615589-39615669)
chr5 (120-151)||(39626590-39626621)
chr5 (223-272)||(39615693-39615742)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 39626663 - 39626757
Alignment:
Q  188 ttcaatcaccacacacctgcttcctccaatccctaaaatctaatcgcgcgctttcctccgctgctggtaatattactccgatcactctcgtaact 282  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||    
T  39626663 ttcaatcaccacacaactgcttcctccaatccctaaaatctaatcgcgcgctttcctccgccgctagtaatactactccgatcacactcgtaact 39626757  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 39615589 - 39615669
Alignment:
Q  33 tcttaaatttaaataatctccttttttccgtcatttccctccaaccaattcc----caccaaccgaaaaaccctaaaataa 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    |||||||| ||||||| ||||||||    
T  39615589 tcttaaatttaaataatctcctttttcccgtcatttccctccaaccaattcccacgcaccaaccaaaaaaccataaaataa 39615669  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 151
Target Start/End: Original strand, 39626590 - 39626621
Alignment:
Q  120 tcactttccctcttcatttccctccaacaacc 151  Q
    ||||||||||||||||||||||||||||||||    
T  39626590 tcactttccctcttcatttccctccaacaacc 39626621  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 39615693 - 39615742
Alignment:
Q  223 aaatctaatcgcgcgctttcctccgctgctggtaatattactccgatcac 272  Q
    |||||| ||||| ||||||||||||| |||||||||| ||||| ||||||    
T  39615693 aaatctgatcgcacgctttcctccgccgctggtaatactactctgatcac 39615742  T

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