View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5046-Insertion-10 (Length: 272)
Name: NF5046-Insertion-10
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5046-Insertion-10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 34291390 - 34291654
Alignment:
| Q |
8 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
107 |
Q |
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| T |
34291390 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
34291489 |
T |
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| Q |
108 |
atcttctgcatttttaaatgttatagatataacaacattgcgcacaatatcgtgcatcttcacagcacattgctgtccaacaacaagaactttcgtctta |
207 |
Q |
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| T |
34291490 |
atcttctgcatttttaaatgctatagatataacaacattgcgcacaatatcgtgcatcttcacagcacattgctgtccaacaacaagaactttcgtctta |
34291589 |
T |
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| Q |
208 |
gatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaat |
272 |
Q |
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| T |
34291590 |
gatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaacaat |
34291654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 34565878 - 34566146
Alignment:
| Q |
8 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
107 |
Q |
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| T |
34565878 |
tttctaactctttagtatcatccaaaataagtgatattgcattgatctcgttcaatttctcttcttttagactcttaaaggtgtactttaccatgaattt |
34565977 |
T |
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| Q |
108 |
atcttctgcatttttaaatgttatagatataacaacattgcgcacaatatcgtgcatcttcaca-------gcacattgctgtccaacaacaagaacttt |
200 |
Q |
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| T |
34565978 |
atcttctgcatttttaaatgctactgatataacaacattacgcacaatatcatgcatcttcacacaccctggcacactgctatccaacaataaaaacttt |
34566077 |
T |
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| Q |
201 |
cgtcttagatcttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaac |
269 |
Q |
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| T |
34566078 |
ctccttagatcttccaccaatgtatgcactcgatttcttgcttcccatgatgcactgatgtctttgaac |
34566146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 15895579 - 15895837
Alignment:
| Q |
19 |
tttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaatttatcttctgcat |
118 |
Q |
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|||| ||||||||| |||||||||||||| ||||| || ||||||| |||||||||| |||||||||| ||||||| ||||||||||||| |||| || |
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| T |
15895579 |
tttgaatcatccaagataagtgatattgctttgatgtcattcaatttctcttcttttaaactcttaaagttgtattgcaccataaatttatgttcttcac |
15895678 |
T |
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| Q |
119 |
ttttaaatgttatagatataacaacattgcgcacaatatcgtgcatcttcaca-------gcacattgctgtccaacaacaagaactttcgtcttagatc |
211 |
Q |
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| T |
15895679 |
ttttaaataaaaatgatataacaacatttcgcacaatatcatgcatctttacacatcctcgcacattactttccagcaacaaaaactttctctttagatt |
15895778 |
T |
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| Q |
212 |
ttccaccaatgtatgcactcggtttcttgctttcaatgatgcattaatgtatttgaaca |
270 |
Q |
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| T |
15895779 |
atctaccaatgtatgcacttggtctcttgcttcccatgatgcagtaatgtgtttgaaca |
15895837 |
T |
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