View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5046-Insertion-11 (Length: 291)
Name: NF5046-Insertion-11
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5046-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 21215145 - 21215428
Alignment:
| Q |
8 |
gcatttacatgtactggtttcatgtcaaacatcgaacacctcttgggaaatttatgatttgcattctttttctttctaaaattctactatattaatagac |
107 |
Q |
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| T |
21215145 |
gcatttacatgtactggtttcatgtcaaacattgaacacctcgtaggaaatttatgatttgctttctttttctatctaaaattctactatattattagac |
21215244 |
T |
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| Q |
108 |
ttacatgatctattatctttagcttactgcgttgttgctgtggggtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggatttta |
207 |
Q |
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| T |
21215245 |
ttacatgatctattatctttagcttactgcgttgttggtgtggagtcttttgatcgccatattgctatggcatttcttgatcgcatcaaggaggatttta |
21215344 |
T |
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| Q |
208 |
ccaaaagatatggtggaggaaaagctgcaacggcaacatctaaaagcttgaataaagaatttgggtactcaagtttataacaat |
291 |
Q |
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| T |
21215345 |
ccaaaagatatggtggaggaaaagctgcaacagcaacatctaaaagcttgaataaagaatttgggtactcaagtttataacaat |
21215428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 7536190 - 7536042
Alignment:
| Q |
128 |
agcttactgcgttgttgctgtggggtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggattttaccaaaagatatggtggagga |
227 |
Q |
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| T |
7536190 |
agcttactgtgttgttgcagtggagtctgttggtagacaaattccaatagcttttcttgaacgtattaaggatgattttaataaaagatatggtggagga |
7536091 |
T |
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| Q |
228 |
aaagctgcaacggcaacatctaaaagcttgaataaagaatttgggtact |
276 |
Q |
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| T |
7536090 |
agagctacaacagcaactgctaaaagtcttaacaaagaatttgggtact |
7536042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 7490096 - 7489948
Alignment:
| Q |
128 |
agcttactgcgttgttgctgtggggtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggattttaccaaaagatatggtggagga |
227 |
Q |
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||||||||| |||||||| |||| |||| ||| | | || ||| | || || |||||||| || || || || ||||||| |||| ||||||||||||| |
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| T |
7490096 |
agcttactgtgttgttgcagtggagtctgttggtagacaaattccaatagcttttcttgaacgtattaaagatgattttaataaaaaatatggtggagga |
7489997 |
T |
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| Q |
228 |
aaagctgcaacggcaacatctaaaagcttgaataaagaatttgggtact |
276 |
Q |
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| T |
7489996 |
agagctacaacagcaactgctaaaagtcttaacaaagaatttgggtact |
7489948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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