View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5046-Insertion-12 (Length: 207)
Name: NF5046-Insertion-12
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5046-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 36149426 - 36149623
Alignment:
| Q |
8 |
catgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtgaaggaggcg |
107 |
Q |
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| T |
36149426 |
catgtttggatgatgagtgcttcttctttgtgaacttgagattccattgtgtgtggaattacttcgacaccatgcagtggtggcggcggtgaaggaggcg |
36149525 |
T |
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| Q |
108 |
gagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgtgtaattgacaagt |
205 |
Q |
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| T |
36149526 |
gagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcacatgtgtaattgacaagt |
36149623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 36083446 - 36083533
Alignment:
| Q |
108 |
gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
192 |
Q |
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| T |
36083446 |
gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt |
36083533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 36149636 - 36149799
Alignment:
| Q |
32 |
tctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtg------aaggaggcggagaatcattttccatca |
125 |
Q |
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| T |
36149636 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttcttgcagctgtggcggtggtggtggtgaaggaggcggagaatcactttccttca |
36149735 |
T |
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| Q |
126 |
tgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
192 |
Q |
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| T |
36149736 |
tttgcacttctttttctagcttgggagag---tcttcttctttctcatctattttgagtgcacatgt |
36149799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 26527568 - 26527381
Alignment:
| Q |
8 |
catgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcg------gcggtgaag |
101 |
Q |
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| T |
26527568 |
catgtttggatgatgagtgcttcttctttgtgaacatgagcttccatggtgtggggaatcacttccacttcatacagcagtggcggtggtagtggtgaag |
26527469 |
T |
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| Q |
102 |
gaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
192 |
Q |
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| T |
26527468 |
gaggcggaaaatcactttcattcatgtgcacttctttttctagcttgggagagtg---ttcttctatctcatctattttgagtgcacatgt |
26527381 |
T |
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