View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5046-Insertion-2 (Length: 936)
Name: NF5046-Insertion-2
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5046-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Complemental strand, 32401201 - 32400635
Alignment:
| Q |
8 |
atagcatcttcattttcatgaattaggttaagtagagctttgagctgattttttctccatgtaacacttcttgtttttcctgttttgaagtattgtctca |
107 |
Q |
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| T |
32401201 |
atagcatcttcattttcatgaattaggttaagtagagctttgagctggttttttctccatgtaacacttcttgtttttcctgttttgaagtattgtctca |
32401102 |
T |
|
| Q |
108 |
aatctcttacagtttcttctacttccacaccaatgttgttgttcattgtaggattaatgtgatgannnnnnnattgttattttctgcaacaatgtctatc |
207 |
Q |
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| T |
32401101 |
aatctcttacagtttcttctacttccacaccaatgttgttgttcattgtaggattaatgtgatgatttttttattgttattttgtgcaacaatgtctatc |
32401002 |
T |
|
| Q |
208 |
ttacacactcaagtatgtggaacatggatttttatggtgcagtgatggtctcataaatgctaagttggttggaatcacctaacattcacagtgtctaata |
307 |
Q |
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| T |
32401001 |
ttacac--tcaagtatgtggaacatggatttttatggtgcagtgatggtctcataaatgctaagttggttggaatcacctaacattcacagtatctaata |
32400904 |
T |
|
| Q |
308 |
attggacaaaacaaaacaaaagtctttgttttgttttttgtgtgctgttcttgagtactactagtaacaannnnnnnggttctaatctaaacgtagatgc |
407 |
Q |
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| T |
32400903 |
attggacaaaacaaaa-----gtctttgttttgttttttgtgtgctgttcttgagtactactagtaacaatttttttggatctaatctaaacgtagatgc |
32400809 |
T |
|
| Q |
408 |
tgtaaaatggtccctttctccttttgctttgtgtattaattgcattctatttaggttagaaggaagttgataaacaattacctacctgtatcgataataa |
507 |
Q |
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| T |
32400808 |
tgtaaaatggtccctttctccttttgctttgtgtattaattgcattctatttaggttagaaggaagttgataaacaattacctacctgtatcgataataa |
32400709 |
T |
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| Q |
508 |
tggactggtagggcaatttcaattaaaaagcatacgatcttaggatgcattcatttaaaaaatatctcatgcaa |
581 |
Q |
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| T |
32400708 |
tggactggtagggcaatttcaattaaaaaacatacgatcttaggatgcattcatttaaaaaatatctcatgcaa |
32400635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 590 - 788
Target Start/End: Complemental strand, 32400312 - 32400108
Alignment:
| Q |
590 |
aatgaatatcgtatgtaaattttaaaaataaatgaatat---aatttatatatgcacactgat---tcggttctaaaatttaatttgatttgagtggttt |
683 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32400312 |
aatgaatatcgtatgtaaattttaaaaataaatgaatattataatttatatatgcacactgataattcggttctaaaatttaatttgatttgagtggttt |
32400213 |
T |
|
| Q |
684 |
ccacaaaaggaaatccgaaaaattcaactatattttgttttatgtggatttcaaacttgtgtcggtatgtgatttttatcgggatctttttggatatgaa |
783 |
Q |
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| T |
32400212 |
ccacaaaaggaaatccgaaaaattcaactatattttgttttatgtggatttcaaacttgtgtcggtatgtgatttttatcggaatctttttggatatgaa |
32400113 |
T |
|
| Q |
784 |
acatc |
788 |
Q |
| |
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||||| |
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| T |
32400112 |
acatc |
32400108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 813 - 936
Target Start/End: Complemental strand, 32400117 - 32399993
Alignment:
| Q |
813 |
atgaaccatcttattaagtggta-taataaccaacctaataccataataatacaaaccaatacgaaaaatgagcaaa-gattgctagtgagaggatacct |
910 |
Q |
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||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32400117 |
atgaaacatcttattaagtggtaatattaaccaacg-aataccataataatacaaacaaatacgaaaaatgagcaaaagattgctagtgagaggatacct |
32400019 |
T |
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| Q |
911 |
actcattttttgatgacttcacttag |
936 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32400018 |
actcattttttgatgacttcacttag |
32399993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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