View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5046-Insertion-4 (Length: 764)

Name: NF5046-Insertion-4
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5046-Insertion-4
NF5046-Insertion-4
[»] chr7 (3 HSPs)
chr7 (64-727)||(7165388-7166055)
chr7 (281-444)||(31822207-31822369)
chr7 (7-63)||(7165304-7165361)
[»] scaffold0311 (3 HSPs)
scaffold0311 (281-444)||(13462-13623)
scaffold0311 (328-446)||(15088-15203)
scaffold0311 (237-290)||(15022-15075)
[»] chr4 (1 HSPs)
chr4 (281-444)||(27737832-27737994)
[»] chr6 (3 HSPs)
chr6 (275-355)||(20985916-20985996)
chr6 (281-344)||(8915517-8915580)
chr6 (379-433)||(30372040-30372093)
[»] chr2 (2 HSPs)
chr2 (281-323)||(18776813-18776855)
chr2 (252-290)||(18776764-18776802)
[»] chr3 (2 HSPs)
chr3 (228-290)||(36472289-36472351)
chr3 (326-363)||(36472548-36472585)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 64 - 727
Target Start/End: Original strand, 7165388 - 7166055
Alignment:
Q  64 gataacatgaattaatgaatagatcgcacaatatgtcagaccccctcttaacgtcttatctaataacataaggatcttttatttgatgatcaatttctca 163  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165388 gataacatgaattaatgaatagatcgcacaatatgtcagaccctctcttaacgtcttatctaataacataaggatcttttatttgatgatcaatttctca 7165487  T
Q  164 tcagaaaaaattaatgagtaaatttgtgttacgttcattgttaaatctctctagacggaaactattaaggtttttagcatttagtggcttaattagaaat 263  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |    
T  7165488 tcaggaaaaattaatgagtaaatttgtgttacgttcatggttaaatctctctaggcggaaactattaagatttttagcatttagtggcttaattagaatt 7165587  T
Q  264 agttaatagttagttac---------aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttt 354  Q
    ||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165588 agttaatagttagttagtggagtttgaagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttt 7165687  T
Q  355 aatcaaaatatttctcttgataatcttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaaatactcaacaaaaaccatac 454  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  7165688 gatcaaaatatttctcttgttaatcttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaattactcaacaaaaatcatac 7165787  T
Q  455 aatatcaatcttgaaatgtgtgtaagaggtagaggtcattggaaacttgctcttatgaaatacacaagtttaagnnnnnnnnnnnnnatcaagtaac--- 551  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||             ||||||||||       
T  7165788 aatatcaatcttgaaatgtgtgtaagaggtggaggtcattggaaacttgctcttatgaaatacacagggttaag---ttttctttttatcaagtaactta 7165884  T
Q  552 ttagtaactaaaatttcatcctttaaaataaataaatagggaattcagagtttggaacccaaccattgcatattcaccctttaaatgtatgaacataact 651  Q
    ||||| ||||||| |||| | |||||||| |||||||||| ||||||||||||  ||||  ||| |||||||| ||    |   ||||||||||||||||    
T  7165885 ttagtgactaaaaattcaccttttaaaatgaataaataggaaattcagagttt-aaacctgacccttgcatataca---atacgatgtatgaacataact 7165980  T
Q  652 atggtcacgtgggactattttttggtcaagttatatcttattacaattgtaataagactatttttgtgaaccaaaa 727  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  7165981 atggtcacgt-ggactattttttggtcaagttttatcttattacaattgtaataagactacttttgtgaacaaaaa 7166055  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 281 - 444
Target Start/End: Complemental strand, 31822369 - 31822207
Alignment:
Q  281 aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaatatttctct-tgataatc 379  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||| ||||  ||    
T  31822369 aagttagttacacaattggttagtctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgat-ttc 31822271  T
Q  380 ttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaaatactcaaca 444  Q
    |||||| ||||||| | || |||||||||||  | |||||||||| |||||||| | ||||||||    
T  31822270 ttttctcaatcaaaccattatggctcttttggct-ctaattctccaaattctcataaactcaaca 31822207  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 7165304 - 7165361
Alignment:
Q  7 aaggaccactccctgcaactgca-gcacatcattacaaccttgaaattctcatctata 63  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7165304 aaggaccactccctgcaactgcaagcacatcattacaaccttgaaattctcatctata 7165361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 113; Significance: 8e-57; HSPs: 3)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 281 - 444
Target Start/End: Original strand, 13462 - 13623
Alignment:
Q  281 aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaatatttctcttgataatct 380  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||    
T  13462 aagttagttacacaattggttagtctaattagtcctataaatatggactagtatgtactcattttctatcttttgatcaaaatatttctct--gtaatct 13559  T
Q  381 tttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaaatactcaaca 444  Q
    ||||| |||||||||||||||||||||||  || |||||||||||||||| ||| |||||||||    
T  13560 tttctcaatcaaagccttttggctctttttgtttctaattctccgaattcgcaattactcaaca 13623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 328 - 446
Target Start/End: Original strand, 15088 - 15203
Alignment:
Q  328 ctagtatgtactcattttctatcttttaatcaaaatatttctcttgataatcttttcttaatcaaagccttttggctcttttgtttcctaattctccgaa 427  Q
    ||||||||||||||||||||||||||| ||||||||||||||||   ||||||||| | |||||||||||||||||||||||  || |||||||||||||    
T  15088 ctagtatgtactcattttctatcttttgatcaaaatatttctctg--taatctttt-tcaatcaaagccttttggctctttttgtttctaattctccgaa 15184  T
Q  428 ttctcaaatactcaacaaa 446  Q
    ||||||| |||||||||||    
T  15185 ttctcaattactcaacaaa 15203  T

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Target: scaffold0311; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 15022 - 15075
Alignment:
Q  237 ttagcatttagtggcttaattagaaatagttaatagttagttacaagttagtta 290  Q
    |||| ||||||||  ||||||||   ||||||||||||||||||||||||||||    
T  15022 ttaggatttagtgtgttaattagggttagttaatagttagttacaagttagtta 15075  T

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Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 281 - 444
Target Start/End: Original strand, 27737832 - 27737994
Alignment:
Q  281 aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaatatttctct-tgataatc 379  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| |||  |||   |    
T  27737832 aagttagttacacaattggttagtccaataagtcctataaataaggactagtatgtactcattttctatcttttgatcaaaatgtttttctacgat-tcc 27737930  T
Q  380 ttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaaatactcaaca 444  Q
    |||||| |||||||||||| ||||||| |||  | |||||||||| |||||||||| ||||||||    
T  27737931 ttttctcaatcaaagccttatggctctattggct-ctaattctccaaattctcaaaaactcaaca 27737994  T

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Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 20985996 - 20985916
Alignment:
Q  275 agttacaagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttta 355  Q
    ||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  20985996 agttagaagttagttacacagtttgttagtccattaagtcctataaatatggactagtatgtactcatttgctatctttta 20985916  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 8915517 - 8915580
Alignment:
Q  281 aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattt 344  Q
    |||||| ||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||    
T  8915517 aagttaattaaacaattggttagtccattaagtcctataaataaggactattatgtactcattt 8915580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 30372040 - 30372093
Alignment:
Q  379 cttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctca 433  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||  ||||||||    
T  30372040 cttttctcaatcaaagccttatggctcttttgtttcc-aattctctaaattctca 30372093  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 18776813 - 18776855
Alignment:
Q  281 aagttagttacacaattggttagtccaataagtcctataaata 323  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  18776813 aagttagttacacaattggttagtccattaagtcctataaata 18776855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 18776764 - 18776802
Alignment:
Q  252 ttaattagaaatagttaatagttagttacaagttagtta 290  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  18776764 ttaattaggattagttaatagttagttacaagttagtta 18776802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 36472289 - 36472351
Alignment:
Q  228 ttaaggtttttagcatttagtggcttaattagaaatagttaatagttagttacaagttagtta 290  Q
    ||||| || |||| ||||||||  |||||||||  ||||||||||||||||||||||||||||    
T  36472289 ttaagattcttaggatttagtgtgttaattagagttagttaatagttagttacaagttagtta 36472351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 36472548 - 36472585
Alignment:
Q  326 gactagtatgtactcattttctatcttttaatcaaaat 363  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  36472548 gactagtatgtactcattttccatcttttgatcaaaat 36472585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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