View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5046-Insertion-5 (Length: 728)
Name: NF5046-Insertion-5
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5046-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 393 - 728
Target Start/End: Complemental strand, 25607122 - 25606788
Alignment:
| Q |
393 |
tgtcagaatcccacgtgataagaatgaagaaaagtttagtgatatgttctcaaagggaagagtgtgtcagatgaagcagagaagtgaatggaggcaaaaa |
492 |
Q |
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| T |
25607122 |
tgtcagaatcccacgtgataagaatgaagaaaagtttagtgatatgttctcaaagggaagagtgtgtcagatgaagcagagaagtgaatggaggcaaaaa |
25607023 |
T |
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| Q |
493 |
cacaatgaagatgatgaatgtgaaagccattttggaaaaagaaaagtataaaaagtttcctaaattataatgaaagagaaacagtgaatgactttaccag |
592 |
Q |
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| T |
25607022 |
cacaatcaagataatgaatgtgaaagccattttggaaaaagaaaagtataaaaagttacctaaattataatgaaagagaaacagtgaatgactttaccag |
25606923 |
T |
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| Q |
593 |
tgtgtacttggaagaagggttttgagggtgatggaactcaaagtgaaacaggattgaagtgattcccaaactccatggaaatatttatgacccttgtggt |
692 |
Q |
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| T |
25606922 |
tgtgtacttggaagaagggttttgagggtgatggaactcaaagtgaaacaggattgaagtgattcccaaactccatggaaatatttatgacccttgtggt |
25606823 |
T |
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| Q |
693 |
tcctatttctagaaaagggttgttgtaatagtggat |
728 |
Q |
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| T |
25606822 |
tactatttctagaaaa-ggttgttgtaatagtggat |
25606788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 25607506 - 25607250
Alignment:
| Q |
8 |
ctcaaaaccatgattattgttgtcattttctatgttttgttgaggtaaaaaactagatggggttttcaaatcccaacctaagattgaacctttggttcta |
107 |
Q |
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| T |
25607506 |
ctcaaaaccatgattattgttgtcattttctatgttttgttgaggtaaaaaactagatggggttttcaaatcccaacctaagattgaacctttggttcta |
25607407 |
T |
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| Q |
108 |
ctaccaagtgtgtcatttgaaatataccctttatcacgtggatcaaaactctaagactccatcacaagatcaaagaccccacttcaattgttgcaggaat |
207 |
Q |
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| T |
25607406 |
ctaccaagtgtgtcatttgaaacataccctttatcacgtgaatcaaaactccaagactccatcacaagataaaagaccccacttcaattgttgcaagaat |
25607307 |
T |
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| Q |
208 |
agtacctcaaaacagttacaaaatctcaactttgcataaacctcataagagataaag |
264 |
Q |
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| T |
25607306 |
agtacctcaaaacagttacaaaatctcaactttgcataaacctcataagagataaag |
25607250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 25607230 - 25607195
Alignment:
| Q |
285 |
gaagtatacagtgtacaaagtacacaagtgtcacac |
320 |
Q |
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| T |
25607230 |
gaagtatacagtgtacaaagtacacaagtgtcacac |
25607195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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