View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5046_high_3 (Length: 334)
Name: NF5046_high_3
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5046_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 487076 - 487317
Alignment:
| Q |
12 |
ttttttatgttagtcgtcatatttatatgttcatatatcgtttgttgtgtatagttgttaaactgttaannnnnnn--cttaaccaatgtacaaaaatca |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
487076 |
ttttttatgttagtc---atatttatatgttcatatatcgtttgttgtgtatagttattaaactgttcatttttttttcttaaccaatgtacaaaaatca |
487172 |
T |
|
| Q |
110 |
atgacattaacataactaatatttaaggtctcctgcaaaaattagttttaacacaagttgaaaagaaatctattttacttttatatatacaagtccgttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
487173 |
atgacattaacataactaatatttaaggtctcctgcaaaaattagttttaacgcaagttgaaaagaaatctattttacttttatatatacaagtccgttt |
487272 |
T |
|
| Q |
210 |
gaataaatttagttgaacttttatgcctgcaacaataattcatga |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
487273 |
gaataaatttagttgaacttttatgccttcaacaataattcatga |
487317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University