View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5046_low_1 (Length: 522)
Name: NF5046_low_1
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5046_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 25695549 - 25695827
Alignment:
| Q |
9 |
acatcatcataataataacctcaatctcaacttt-cacagcatttttcacacacgtggtctccaccatcatgtgaaatgagtgtccttatgtttctaaat |
107 |
Q |
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| T |
25695549 |
acatcatcatcataataacctcaatctcaacttttcacagcatttttcacacacgtggtctccaccatcatgtgaaatgagtgtccttatgtttctaaat |
25695648 |
T |
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| Q |
108 |
catgactctaccaccacttcttctcaatcttttacaacaacatttagtaacataacaaaatgtgttaccaaactcaaaagacactttcttcattgtttct |
207 |
Q |
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| T |
25695649 |
catgactctaccaccacttcttctcaatcttttacaacaacatttagtaacataacaaaatgtgttaccaaactcaaaagacactttcttcattgtttct |
25695748 |
T |
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| Q |
208 |
gatttttcttcttctacaatggcacattcttctaaacacactcctcgtacccctacttatctcttaccttgtgtcattg |
286 |
Q |
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| T |
25695749 |
gatttttcttcttctacaatggcacattcttctaaacacactcctcgtacccctacttatctcttaccttgtgtcattg |
25695827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 351 - 484
Target Start/End: Original strand, 25695892 - 25696024
Alignment:
| Q |
351 |
cacaccccatcaccaacccacttctcaatttcccttcaatcgtcaaactatgaaacaccgacacagacacaaacatgtatggtcatttgacacgacacta |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25695892 |
cacaccccatcaccaacccacttctcaatttcccttcaatcgtcaaactatgaaacactgacacagacacaaacatgtatggtcatttgacacgacact- |
25695990 |
T |
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| Q |
451 |
acattgacatatctatataggaataatttgaagg |
484 |
Q |
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| T |
25695991 |
acattgacatatgtatataggaataatttgaagg |
25696024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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