View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5046_low_6 (Length: 293)
Name: NF5046_low_6
Description: NF5046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5046_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 273
Target Start/End: Complemental strand, 487062 - 486815
Alignment:
| Q |
26 |
aaaataaaaaatgtgtggttgtgaaattaaaatggaaggacttacatggatgacatcaaccttgaccccatcaattccagactcttccaaaagagagtga |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
487062 |
aaaaaaaaaaatgtgtggttgtgaaattaaaatggaaggacttacatggatgacatcaaccttgaccccatcaattccagactcttccaaaagagagtga |
486963 |
T |
|
| Q |
126 |
ataccttcatacatttgatcaaccaaatgaggaggaactaacccaacaccattattaacaatcttatcaacagccaaatcctccatagtagtttccaatc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
486962 |
ataccttcatacatttgatcaaccaaatgaggaggaactaacccaacaccattattaacaatcttatcaacagccaaatcctccatagtagtttccaatc |
486863 |
T |
|
| Q |
226 |
caacggttaacttaggcttctccacaatagcttcaggtagaccctcaa |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
486862 |
caacggttaacttaggcttctccacaatagcttcaggtagaccctcaa |
486815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 34698100 - 34698149
Alignment:
| Q |
162 |
actaacccaacaccattattaacaatcttatcaacagccaaatcctccat |
211 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| || || ||||||||||| |
|
|
| T |
34698100 |
actaaccctacaccattgttaacaatcttatccaccgctaaatcctccat |
34698149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University