View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5047-Insertion-2 (Length: 901)
Name: NF5047-Insertion-2
Description: NF5047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5047-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 31053938 - 31054306
Alignment:
| Q |
8 |
acacattgcttttaacgatgaaggtggaatcacatccgtagatttcaatgttggaaagtctgatcaaaccgctgtgaaggtctctggaaagcggaaaaag |
107 |
Q |
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| T |
31053938 |
acacattgcttttaatgatgaaggtggaatcacatccgtagatttcaatgttggaaagtctgatcaaaccgctgtgaaggtctctgaaaagcggaaaaag |
31054037 |
T |
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| Q |
108 |
atacactacagcttgtccttatttatgagtttatgactcacaatatctttttctttataatctgctgattaacatttgtgtgcttcgttgtttttgagtt |
207 |
Q |
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| T |
31054038 |
gtacactacaacttgtccttatttataagtttatgactcacaatatctttttctttataatctgctgattaacatttgagtgctttgttgtttttgagtt |
31054137 |
T |
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| Q |
208 |
gttgtgtttcaaaacatttgtgttctgaaatggctttttcttcgtatgtatttattaaaataggatgtatttttatgcagaatgcgcaacactatgagtc |
307 |
Q |
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| T |
31054138 |
gttgtgtttcaaaacatttgtgttctgaaatggctttttcgtcgtatgtatttattaaaataggatgtatttttatgcagaatgcgcaacactatgagtc |
31054237 |
T |
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| Q |
308 |
caatacagcattatgtaaagtttctaccaaaaatgattcttatatcgtgaggtatgtgctttgttatac |
376 |
Q |
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| T |
31054238 |
caatacatcattatgtaaagtttctaccaaaaatgattcttatatcgtgaggtatgtggtttgttatac |
31054306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 570 - 806
Target Start/End: Original strand, 31054307 - 31054542
Alignment:
| Q |
570 |
ctgatgaaaggaattgggaaagaaagcaaaagtaattttactaacattgccaaaacaaaagtcccatatcgagtgtttgtacacgagagatgggaatata |
669 |
Q |
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| T |
31054307 |
ctgatgaaaggaattgggaaagaaagcaaaattaattttactaacattgccaaaacaaaagtcccatatcgagtgtctgtacacgagagataggaatata |
31054406 |
T |
|
| Q |
670 |
tacatataaaacaagagtccaccaattagagatatcataccatccaaattataggggattttccataa-ttttagtgatatatcactagtcattattcgg |
768 |
Q |
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| T |
31054407 |
tacatataaaacaagagtccacc-atttgagatatcttaccatccaaa-tataggggattttccataatttttagtgatatatcactggtcattgttcgg |
31054504 |
T |
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| Q |
769 |
tgatggtaattttggagattataagttaagttgatgca |
806 |
Q |
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| T |
31054505 |
tgatggtaattttggagattataagttaagttgatgca |
31054542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 839 - 896
Target Start/End: Original strand, 31054565 - 31054622
Alignment:
| Q |
839 |
gtaatttccatggttacgatcattcaaataatggcaatatattaaaacataatttaaa |
896 |
Q |
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| T |
31054565 |
gtaatttccatagttccagtcattcgaataatggcaatatattaaaacataatttaaa |
31054622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 53451895 - 53451457
Alignment:
| Q |
8 |
acacattgcttttaacgatgaaggtggaatcacatccgtagatttcaatgttggaaagtctgatcaaaccgctgtgaaggtctctggaaagcggaaaaag |
107 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |
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| T |
53451895 |
acacattgcttttaaggatgaaggtggaatcacatccgtagatttcaatgttggaaagtctgatcgaaccgctgtcaaggtctctggaaagcggaagaag |
53451796 |
T |
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| Q |
108 |
atacactacagcttgtccttatttatgagtttatgactcacaatatctttttctttataatctgctgattaacatttgtgtgcttcgttgtttttgagtt |
207 |
Q |
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| T |
53451795 |
gtacactgcagcttttctttatttatgagtttatgactcacaatatcttt--ctttataatcagcttattaacatttgtgtaatt--------------t |
53451712 |
T |
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| Q |
208 |
gttgtgtttcaaaacatttgtgttctgaaatggctttttcttcgtatgtatttattaaaataggatgtatttttatgcagaatgcgcaacactatgagtc |
307 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||| || || || | ||||||||||||||||||||||||||||| |||||| |
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| T |
53451711 |
gttgtgtttcaaaa-atttgtgttctaaaatggctttttc--cg------ttccttcgcct---atgtatttttatgcagaatgcgcaacactttgagtc |
53451624 |
T |
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| Q |
308 |
caatacagcattatgtaaagtttctaccaaaaatgattcttatatcgtgaggtatgtgctttgttatacataaatataagctaagagt-------tattt |
400 |
Q |
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| T |
53451623 |
caatacagcattatgtaaagtttctaccaaaaatgattcttatattgtgaggtacgtgctttgctatatataaatgtaagctgagattttttttgtatgt |
53451524 |
T |
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| Q |
401 |
atatgtgtc--tgtatttgtttgcttcacccacttctcttctttctcggtgatctctgaactctttg |
465 |
Q |
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| T |
53451523 |
gtatgtgtctatgtatttgtttgcttctcccactgctcttctttctcggtgaattctgaactctttg |
53451457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 53451410 - 53451325
Alignment:
| Q |
465 |
ggttcccttttggaagtgaatcaacaattaatcaagtaaccagaactgcttaatgtttcggtaagaatgattttcttatccaatct |
550 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
53451410 |
ggttcccttttggaagtgaatcaacaattaatcaagcacccagaactgcttaatggttcggtaagaattattttcttatcaaatct |
53451325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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