View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5047-Insertion-4 (Length: 839)
Name: NF5047-Insertion-4
Description: NF5047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5047-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 312 - 829
Target Start/End: Complemental strand, 36739549 - 36739038
Alignment:
| Q |
312 |
atagtgtttgcttctgttagaattggttcccatcccaaaatatctaccgaacaattgagagactttaaagtccnnnnnnnnn-gtatattttgtcttgca |
410 |
Q |
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| T |
36739549 |
atagtgtttgcttatgttagaattggttcccatcccaaaatatctaccgaacaaatgagagactttaaagtccaaaaaaaaaagtatattttgtcttgca |
36739450 |
T |
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| Q |
411 |
gcgtctcacttggttgggacctataacaaccattgttgaatgtttatccactttaggtaggtggcctgggctagttgagatgttgggactgaaatatttg |
510 |
Q |
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| T |
36739449 |
gcgtctcacttggttgggacctataacaaccattgttgaatgtttatccactttaggttgctggcctgggctagttgagatgttgggactgaaatatttg |
36739350 |
T |
|
| Q |
511 |
aaaagtttcaaggtggaactaaaagagccgtataatatattcttaattaaaagcagccatatgtcatgatgtcatcaccaataattatgagtatattttg |
610 |
Q |
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| T |
36739349 |
aaaagtttcaaagtggaactaaaagagccgtataatatattcttaattaaaagcagccatatgtcatgatgtcatcaccaataattatgagtatattttg |
36739250 |
T |
|
| Q |
611 |
ctattgaccatgctattctagaaacagaattagcttttgagaaaggggtcaagaaagtttataattaatgagttgctctacatgaccgtcaatatattct |
710 |
Q |
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| T |
36739249 |
ctattga-catgctattctagaaacagaattagcttttgagaaa-gggtcaagaaagtttataattaatgagttgctctacatgaccgtcaatatattct |
36739152 |
T |
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| Q |
711 |
gctgcaaaaattctagtagcgttttgcgtaaggtatgaaggtgagtggggtgaccc-aaaatttcttagtatatattaattaattaatttaatagtttaa |
809 |
Q |
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| T |
36739151 |
gctgc-aaaattctagtagcgttttgcgtaaggtatg-aggtgagtggggtgacccaaaaatttcttagtatat----attaattaatttaatagtttaa |
36739058 |
T |
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| Q |
810 |
aaggtct-aaaaattgcttgt |
829 |
Q |
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| T |
36739057 |
aa-gtctaaaaaattgcttgt |
36739038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 36740690 - 36740402
Alignment:
| Q |
7 |
aataaaaagggcggaaagtattagttggaaactttgaattagaaggaccccttgtccttgacggcttgcatcattttggaaaacaaattgatataatcaa |
106 |
Q |
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| T |
36740690 |
aataaaaagggcggaaagtattagttggaaactttgaattaaaaggaccccttgtccttgacggcttgcatcattttggaaaacaaattgatataatcaa |
36740591 |
T |
|
| Q |
107 |
cacaacataaatcaagcaacaagaacaaagaaagtccataataatatagattttcaagttctttggtatatgtccacaacgaaacctgctggccaattaa |
206 |
Q |
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| T |
36740590 |
cacaacataaatcaagcatcaagaacaaagaaagtccataataatatagattttcaagttctttggcatatgtccacaacgaaacctgctggccaattaa |
36740491 |
T |
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| Q |
207 |
ttaaaagtaaccatcacccttcaccaggccaactaatttgcatattttaagcattacagtatactattactaatgcatgtttatgttac |
295 |
Q |
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| T |
36740490 |
ttaaaagtaaccatcacccttcaccaggccaactaatttgcatattttaagcattacagtatactattactaatgcatgcttatgttac |
36740402 |
T |
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