View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5047-Insertion-6 (Length: 510)
Name: NF5047-Insertion-6
Description: NF5047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5047-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Original strand, 2068382 - 2068884
Alignment:
| Q |
8 |
ggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctcttcttcttcnnnnnnnnnnnnnnnnngct |
107 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |
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| T |
2068382 |
ggttttgtttaaataattcccatgagctattcactaaagcctcttgtttctctgtaaaacccatatctcttttcttcttctttttgtttttatttttgct |
2068481 |
T |
|
| Q |
108 |
atttgtatttgctatgtattaattgtacattcaatacttgtttatatagaaaacttggacgtgaaaagagatgcaattgattttttatgannnnnnnnnn |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2068482 |
atttgtatttgctatgtattaattgtacattcaatacttgtttatatagaaaacttggaggtgaaaagagatgcaattgattttttatgatttttttttt |
2068581 |
T |
|
| Q |
208 |
aaagaatctattggcttgtggaaatggctgttgacattattaaagagacaataatcatttaaaaaacttaatctaacaagttttcattgaagttagtaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2068582 |
aaagaatctattggcttgtggaaatggctgttgacattattaaagagacaataatcatttaaaaaacttaatctaacaagttttcattgaagttaataaa |
2068681 |
T |
|
| Q |
308 |
tattttaaatataaaactaatcattaatgaaagtattattcaacttgatttaatcaatgtaattattaattaatctaataaaaataattattctcctcgt |
407 |
Q |
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||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2068682 |
tattttaaataaaaaactaatcattaatgaaagtattgtttaacttgatttaatcaatgtaattattaattaatctaataaaaataattattctcctcgt |
2068781 |
T |
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| Q |
408 |
ctcatggtgaatatttcacttgagttgtgcccaatttttaataatgtgagttattttgattttaataacaaaatgagtttcatttactaaaataatttta |
507 |
Q |
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| T |
2068782 |
ctcatggtgaatatttcacttgagttgtgcccaatttttaataatgtgagttattttgattttaataacaaaatgagtttcatttactaaaataatttta |
2068881 |
T |
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| Q |
508 |
tta |
510 |
Q |
| |
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||| |
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| T |
2068882 |
tta |
2068884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 40847718 - 40847791
Alignment:
| Q |
7 |
aggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctctt |
80 |
Q |
| |
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|||||||| || || | ||||||||||||| | || |||||||||||| |||| ||||||||||||| |||||| |
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| T |
40847718 |
aggttttgattgaaggtttcccatgagctactaaccaaagcctcttgtctctcagtgaaacccatatttctctt |
40847791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 34678506 - 34678207
Alignment:
| Q |
10 |
ttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctcttcttcttcnnnnnnnnnnnnnnnnngctat |
109 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| || ||||| |
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| T |
34678506 |
ttttgtttaaatgattcgaatgagctatttactaaagcctcttgtttctcggtgaaacccatatttctcttcttatt----ttttattttgttttgctat |
34678411 |
T |
|
| Q |
110 |
ttgtatttgctatgtattaattgtacattcaatacttgtttatatagaaaacttggacgtgaaaagagatgcaattgattttttatgannnnnnnnnnaa |
209 |
Q |
| |
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|||||||||| ||||| |||||||||||||||| | ||||||||||||||| || || ||||||||||||| | | |||| | || | |
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| T |
34678410 |
ttgtatttgcaatgtaataattgtacattcaatgcatgtttatatagaaaaattagaggtgaaaagagatgtagt--atttcgtgcgatttattttttta |
34678313 |
T |
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| Q |
210 |
a-gaatctattggcttgtggaaatggctgttgacattattaaagagacaataatcatttaaaaaacttaatctaacaagttttcattgaagttagtaaat |
308 |
Q |
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| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||| |||||||||||| ||| |||||||||| |||||| ||||| |
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| T |
34678312 |
atgaatctattggcttgtggaaatggctattgacaatattatagagacaataatcttttcaaaaacttaatcaaacgagttttcattaaagttaataaat |
34678213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 34685675 - 34685596
Alignment:
| Q |
7 |
aggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctcttcttctt |
86 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |
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| T |
34685675 |
aggttttgtttgaatgattcccatgagctattcactaaagcctcttgattctctgtgaaacccatatttctcttattctt |
34685596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 34649065 - 34648769
Alignment:
| Q |
8 |
ggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctcttcttcttcnnnnnnnnnnnnnnnnngct |
107 |
Q |
| |
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|||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||| ||||| ||||||||| | ||| |
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| T |
34649065 |
ggttttgtttaagtgattcccaagaactattcactaaagcctcttgtttctcggtgaaactcatatttctcttcttgt---------attttgttttgct |
34648975 |
T |
|
| Q |
108 |
atttgtatttgctatgtattaattgtacattcaatacttgtttatatagaaaacttggacgtgaaaagagatgcaattgattttttatgannnnnnnnnn |
207 |
Q |
| |
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|||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||| | ||| ||| || ||| |
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| T |
34648974 |
atttatttttgcaatgtattaattgttcattcaatacttgtttatatagaaaacttgttggtgtaaacagatgtagttgctttgttgtga-ctatattta |
34648876 |
T |
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| Q |
208 |
aaagaatctattggcttgtggaaatggctgttgacattattaaagagacaataatcatttaaaaaacttaatctaacaagttttcattgaagttagtaaa |
307 |
Q |
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|||||||||||||||||||| |||||| |||||||||| ||||| |||||||| || ||||||||| || |||| ||||||| | ||||| |||| |
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| T |
34648875 |
aaagaatctattggcttgtgaaaatggtcattgacattatcaaagaaacaataatgtatttaaaaacttattcaaacatgttttcactaaagtttataaa |
34648776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 18270651 - 18270572
Alignment:
| Q |
7 |
aggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctcttcttctt |
86 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||||||||||||| || || ||||||||||||| ||||| |||||| |
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| T |
18270651 |
aggttttgtttaaatgcttcccatgagctattaactaaagcctcttggttttcggtgaaacccatatttctctacttctt |
18270572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 34422456 - 34422532
Alignment:
| Q |
10 |
ttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctcttcttctt |
86 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||| | |||||||||||| |
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| T |
34422456 |
ttttgtttaaatgattcccatgagctattcactaaaaactcttgcttctcagtgaatcccatttttctcttcttctt |
34422532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 34430731 - 34430807
Alignment:
| Q |
10 |
ttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctcttcttctt |
86 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||| || ||||||||| |
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| T |
34430731 |
ttttgtttgaatgattcccatgaactattcactaaagactcttgcttctcggtgaaacccatatttcccttcttctt |
34430807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 34678167 - 34678128
Alignment:
| Q |
355 |
atttaatcaatgtaattattaattaatctaataaaaataa |
394 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||||| |
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| T |
34678167 |
atttagtcaatgtaataattaattaatctaataaaaataa |
34678128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 34685563 - 34685502
Alignment:
| Q |
121 |
atgtattaattgtacattcaatacttgtttatatagaaaacttggacgtgaaaagagatgca |
182 |
Q |
| |
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||||| ||||| | ||||||||||||||||||||||| ||||| | ||| ||||||||||| |
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|
| T |
34685563 |
atgtaataattttgcattcaatacttgtttatatagacaacttataggtgtaaagagatgca |
34685502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 27842678 - 27842750
Alignment:
| Q |
7 |
aggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctctct |
79 |
Q |
| |
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||||||||||| |||| || |||||||||| ||||||||||| ||||| || ||||||| ||||| ||||| |
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| T |
27842678 |
aggttttgtttgaatgcctcatatgagctattgactaaagcctcctgtttatcagtgaaactcatatttctct |
27842750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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